API for const-ae/glmGamPoi
Fit a Gamma-Poisson Generalized Linear Model

Global functions
.cond Source code
add_attr_if_intercept Source code
add_vector_to_each_column Source code
add_vector_to_each_row Source code
as.list.glmGamPoi Man page Source code
calculate_mu Source code
combine_size_factors_and_offset Source code
compute_gp_deviance Source code
compute_gp_deviance_residuals_matrix Source code
compute_gp_deviance_sum Source code
conventional_deriv_score_function_fast Source code
conventional_loglikelihood_fast Source code
conventional_overdispersion_mle Source code
conventional_score_function_fast Source code
convert_chr_vec_to_model_matrix Source code
convert_formula_to_model_matrix Source code
delayed_matrix_apply_block Source code
delayed_matrix_multiply Source code
div_zbz_dbl Source code
div_zbz_dbl_mat Source code
div_zbz_int Source code
div_zbz_int_mat Source code
divide_each_column_by_vector Source code
divide_each_row_by_vector Source code
estimate_betas_fisher_scoring Man page Source code
estimate_betas_group_wise Man page Source code
estimate_betas_group_wise_optimize_helper Source code
estimate_betas_optim Source code
estimate_betas_roughly Man page Source code
estimate_betas_roughly_group_wise Man page Source code
estimate_dispersions_by_moment Source code
estimate_dispersions_roughly Source code
estimate_global_overdispersion Source code
estimate_global_overdispersions_fast Source code
estimate_overdispersions_fast Source code
estimate_size_factors Man page Source code
eval_with Source code
eval_with_q Source code
extract_data_from_formula Source code
fitBeta_diagonal_fisher_scoring Source code
fitBeta_fisher_scoring Source code
fitBeta_one_group Source code
format.glmGamPoi Man page Source code
format.summary.glmGamPoi Man page Source code
format_matrix Man page Source code
get_aggregation_function Source code
get_col_data Source code
get_groups_for_model_matrix Source code
get_row_groups Source code
glm_gp Man page Source code
glm_gp_impl Man page Source code
handle_data_parameter Source code
handle_design_parameter Source code
handle_offset_param_for_predict Source code
handle_ridge_penalty_parameter Source code
handle_subsample_parameter Source code
is_on_disk.glmGamPoi Source code
loc_median_fit Man page Source code
lte_n_equal_rows Source code
make_dataset Source code
make_model_matrix_for_predict Source code
make_table_if_small Source code
multiply_vector_to_each_column Source code
multiply_vector_to_each_row Source code
my_matrix_summary Source code
my_vec_summary Source code
overdispersion_mle Man page Source code
overdispersion_mle_impl Source code
overdispersion_shrinkage Man page Source code
parse_contrast Source code
predict.glmGamPoi Man page Source code
print.glmGamPoi Man page
print.summary.glmGamPoi Man page
pseudobulk Man page Source code
qres.gampoi Source code
relevel_columns_to_reference_level Source code
residuals.glmGamPoi Man page Source code
solve_lm_for_A Man page Source code
solve_lm_for_B Man page Source code
subtract_vector_from_each_column Source code
subtract_vector_from_each_row Source code
summary.glmGamPoi Man page Source code
test_de Man page Source code
test_de_q Source code
test_pseudobulk Source code
test_pseudobulk_q Source code
validate_Y_matrix Source code
validate_model_matrix Source code
variance_prior Man page Source code
vars Man page Source code
warn_non_convergence Source code
write_rows_to_hdf5_matrix Source code
write_rows_to_matrix Source code
const-ae/glmGamPoi documentation built on July 25, 2024, 10:22 p.m.