Files in const-ae/glmGamPoi
Fit a Gamma-Poisson Generalized Linear Model

.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R R/calculate_mu.R R/estimate_betas.R R/estimate_size_factors.R R/eval_with.R R/glmGamPoi-package.R R/glm_gp.R R/glm_gp_impl.R R/loc_median_fit.R R/make_dataset.R R/overdispersion.R R/parse_contrast.R R/predict.R R/print_model.R R/pseudobulk.R R/quasi_gamma_poisson_shrinkage.R R/residuals.R R/test_de.R R/test_pseudobulk.R R/utils.R README.Rmd README.md
inst/CITATION
inst/include/deviance.h
inst/include/fisher_scoring_steps.h
man/as.list.glmGamPoi.Rd man/estimate_betas_fisher_scoring.Rd man/estimate_betas_group_wise.Rd man/estimate_betas_roughly.Rd man/estimate_betas_roughly_group_wise.Rd man/estimate_size_factors.Rd
man/figures/README-coefficientComparison-1.png
man/figures/README-make_volcano_plot-1.png
man/figures/README-plot_marker_genes-1.png
man/figures/logo.svg
man/format_matrix.Rd man/glm_gp.Rd man/glm_gp_impl.Rd man/loc_median_fit.Rd man/overdispersion_mle.Rd man/overdispersion_shrinkage.Rd man/predict.glmGamPoi.Rd man/print.glmGamPoi.Rd man/pseudobulk.Rd man/residuals.glmGamPoi.Rd man/solve_lm_for_A.Rd man/test_de.Rd man/variance_prior.Rd man/vars.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/beta_estimation.cpp
src/deviance.cpp
src/overdispersion.cpp
src/utils.cpp
tests/testthat.R tests/testthat/check-derivatives.R tests/testthat/helper-architecture.R tests/testthat/setup.R tests/testthat/test-calculate_mu.R tests/testthat/test-estimate_betas.R tests/testthat/test-eval_with.R tests/testthat/test-glm_gp.R tests/testthat/test-loc_median_fit.R tests/testthat/test-overdispersion.R tests/testthat/test-parse_contrast.R tests/testthat/test-predict.R tests/testthat/test-printing.R tests/testthat/test-pseudobulk.R tests/testthat/test-residuals.R tests/testthat/test-shrinkage.R tests/testthat/test-size_factors.R tests/testthat/test-solve_helper.R tests/testthat/test-test_de.R tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/glmGamPoi.Rmd
vignettes/img/kang_data_overview.png
vignettes/img/kang_data_overview.pptx
vignettes/man/figures/README-coefficientComparison-1.png
vignettes/pseudobulk.Rmd
const-ae/glmGamPoi documentation built on Feb. 13, 2024, 1:35 a.m.