API for const-ae/proDA
Differential Abundance Analysis of Label-Free Mass Spectrometry Data

Global functions
$,proDAFit-method Man page
$<-,proDAFit-method Man page
%zero_dom_mat_mult% Man page
.DollarNames.proDAFit Man page Source code
.proDAFit Man page
`%zero_dom_mat_mult%` Source code
abundances Man page
abundances,proDAFit-method Man page
accessor_methods Man page
as_replicate Man page Source code
calculate_sigma2_parameters Source code
calculate_skew_correction_factors Source code
check_valid_model_matrix Source code
coefficient_variance_matrices Man page
coefficient_variance_matrices,proDAFit-method Man page
coefficients Man page
coefficients,proDAFit-method Man page
convergence Man page
convergence,proDAFit-method Man page
convert_chr_vec_to_model_matrix Source code
convert_formula_to_model_matrix Source code
design,proDAFit-method Man page
dist_approx Man page
dist_approx,ANY-method Man page
dist_approx,SummarizedExperiment-method Man page
dist_approx,proDAFit-method Man page
dist_approx_impl Man page
dist_approx_mean_var Source code
distance_sq Man page Source code
dollar_methods Man page
dropout_curves Source code
dt.scaled Source code
feature_parameters Man page
feature_parameters,proDAFit-method Man page
fit_feature_parameters Source code
fit_parameters_loop Source code
generate_synthetic_data Man page Source code
grad_fnc Source code
has_intercept Source code
hess_fnc Source code
hyper_parameters Man page
hyper_parameters,proDAFit-method Man page
inv_mills_ratio Source code
invert_hessian_matrix Source code
invprobit Man page Source code
invprobit_fast Man page Source code
location_prior Source code
log_parameters Source code
median_normalization Man page Source code
mply_dbl Man page Source code
msply_dbl Man page Source code
objective_fnc Source code
parse_contrast Source code
pd_lm Man page Source code
pd_lm.fit Man page Source code
pd_row_f_test Man page Source code
pd_row_t_test Man page Source code
predict,proDAFit-method Man page
proDA Man page Source code
proDAFit Source code
proDAFit-class Man page
proDA_package Man page
reference_level Man page
reference_level,proDAFit-method Man page
result_names Man page
result_names,proDAFit-method Man page
run_nested_model_comparison Source code
run_wald_parameter_test Source code
test_diff Man page Source code
variance_prior Source code
const-ae/proDA documentation built on July 23, 2020, 9:04 p.m.