Files in const-ae/proDA

Differential Abundance Analysis of Label-Free Mass Spectrometry Data

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/AllClasses.R R/AllGenerics.R R/calculate_distance.R R/completion.R R/generate_synthetic_data.R R/methods.R R/normalization.R R/pd_lm.R R/predict.R R/proDA.R R/simple_tests.R R/stats_functions.R R/test_diff.R R/util.R README.Rmd README.md

_pkgdown.yml

docs/articles/Introduction.html

docs/articles/Introduction_files/figure-html/protein_dist-1.png

docs/articles/Introduction_files/figure-html/qc-mis_barplot-1.png

docs/articles/Introduction_files/figure-html/qc-raw_boxplot-1.png

docs/articles/Introduction_files/figure-html/sample_dist-1.png

docs/articles/data-import.html

docs/articles/index.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/index_files/pagedtable-1.1/css/pagedtable.css

docs/index_files/pagedtable-1.1/js/pagedtable.js

docs/link.svg

docs/man/figures/README-screenshot_fit_functions.png

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/abundances.html

docs/reference/accessor_methods.html

docs/reference/as_replicate.html

docs/reference/cash-proDAFit-method.html

docs/reference/coefficient_variance_matrices.html

docs/reference/coefficients.html

docs/reference/convergence.html

docs/reference/dist_approx-proDAFit-method.html

docs/reference/dist_approx.html

docs/reference/dist_approx_impl.html

docs/reference/distance_sq.html

docs/reference/feature_parameters.html

docs/reference/figures/README-protein_dist-1.png

docs/reference/figures/README-qc-mis_barplot-1.png

docs/reference/figures/README-qc-raw_boxplot-1.png

docs/reference/figures/README-sample_dist-1.png

docs/reference/figures/README-screenshot_fit_functions.png

docs/reference/generate_synthetic_data.html

docs/reference/grapes-zero_dom_mat_mult-grapes.html

docs/reference/hyper_parameters.html

docs/reference/index.html

docs/reference/invprobit-1.png

docs/reference/invprobit.html

docs/reference/invprobit_fast.html

docs/reference/median_normalization.html

docs/reference/mply_dbl.html

docs/reference/pd_lm.fit.html

docs/reference/pd_lm.html

docs/reference/pd_row_t_test.html

docs/reference/predict-proDAFit-method.html

docs/reference/proDA.html

docs/reference/proDAFit-class.html

docs/reference/proDA_package.html

docs/reference/reference_level.html

docs/reference/result_names.html

docs/reference/test_diff.html

inst/extdata/proteinGroups.txt

inst/script/proteinGroups_information.txt

inst/site/build-site.R man/abundances.Rd man/accessor_methods.Rd man/as_replicate.Rd man/cash-proDAFit-method.Rd man/coefficient_variance_matrices.Rd man/coefficients.Rd man/convergence.Rd man/dist_approx.Rd man/dist_approx_impl.Rd man/distance_sq.Rd man/feature_parameters.Rd man/generate_synthetic_data.Rd man/grapes-zero_dom_mat_mult-grapes.Rd man/hyper_parameters.Rd man/invprobit.Rd man/invprobit_fast.Rd man/median_normalization.Rd man/mply_dbl.Rd man/pd_lm.Rd man/pd_lm.fit.Rd man/pd_row_t_test.Rd man/predict-proDAFit-method.Rd man/proDA.Rd man/proDAFit-class.Rd man/proDA_package.Rd man/reference_level.Rd man/result_names.Rd man/test_diff.Rd tests/testthat.R tests/testthat/test-calculate_distance.R tests/testthat/test-design_parsing.R tests/testthat/test-normalization.R tests/testthat/test-pd_lm.R tests/testthat/test-proDA.R tests/testthat/test-proDAFit_S4.R tests/testthat/test-test_diff.R

vignettes/.gitignore

vignettes/Introduction.Rmd vignettes/data-import.Rmd

vignettes/figures/README-protein_dist-1.png

vignettes/figures/README-qc-mis_barplot-1.png

vignettes/figures/README-qc-raw_boxplot-1.png

vignettes/figures/README-sample_dist-1.png

vignettes/figures/README-screenshot_fit_functions.png

const-ae/proDA documentation built on Oct. 31, 2023, 9:39 p.m.