Files in const-ae/proDA
Differential Abundance Analysis of Label-Free Mass Spectrometry Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/calculate_distance.R
R/completion.R
R/generate_synthetic_data.R
R/methods.R
R/normalization.R
R/pd_lm.R
R/predict.R
R/proDA.R
R/simple_tests.R
R/stats_functions.R
R/test_diff.R
R/util.R
README.Rmd
README.md
_pkgdown.yml
docs/articles/Introduction.html
docs/articles/Introduction_files/figure-html/protein_dist-1.png
docs/articles/Introduction_files/figure-html/qc-mis_barplot-1.png
docs/articles/Introduction_files/figure-html/qc-raw_boxplot-1.png
docs/articles/Introduction_files/figure-html/sample_dist-1.png
docs/articles/data-import.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/index_files/pagedtable-1.1/css/pagedtable.css
docs/index_files/pagedtable-1.1/js/pagedtable.js
docs/link.svg
docs/man/figures/README-screenshot_fit_functions.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/abundances.html
docs/reference/accessor_methods.html
docs/reference/as_replicate.html
docs/reference/cash-proDAFit-method.html
docs/reference/coefficient_variance_matrices.html
docs/reference/coefficients.html
docs/reference/convergence.html
docs/reference/dist_approx-proDAFit-method.html
docs/reference/dist_approx.html
docs/reference/dist_approx_impl.html
docs/reference/distance_sq.html
docs/reference/feature_parameters.html
docs/reference/figures/README-protein_dist-1.png
docs/reference/figures/README-qc-mis_barplot-1.png
docs/reference/figures/README-qc-raw_boxplot-1.png
docs/reference/figures/README-sample_dist-1.png
docs/reference/figures/README-screenshot_fit_functions.png
docs/reference/generate_synthetic_data.html
docs/reference/grapes-zero_dom_mat_mult-grapes.html
docs/reference/hyper_parameters.html
docs/reference/index.html
docs/reference/invprobit-1.png
docs/reference/invprobit.html
docs/reference/invprobit_fast.html
docs/reference/median_normalization.html
docs/reference/mply_dbl.html
docs/reference/pd_lm.fit.html
docs/reference/pd_lm.html
docs/reference/pd_row_t_test.html
docs/reference/predict-proDAFit-method.html
docs/reference/proDA.html
docs/reference/proDAFit-class.html
docs/reference/proDA_package.html
docs/reference/reference_level.html
docs/reference/result_names.html
docs/reference/test_diff.html
inst/extdata/proteinGroups.txt
inst/script/proteinGroups_information.txt
inst/site/build-site.R
man/abundances.Rd
man/accessor_methods.Rd
man/as_replicate.Rd
man/cash-proDAFit-method.Rd
man/coefficient_variance_matrices.Rd
man/coefficients.Rd
man/convergence.Rd
man/dist_approx.Rd
man/dist_approx_impl.Rd
man/distance_sq.Rd
man/feature_parameters.Rd
man/generate_synthetic_data.Rd
man/grapes-zero_dom_mat_mult-grapes.Rd
man/hyper_parameters.Rd
man/invprobit.Rd
man/invprobit_fast.Rd
man/median_normalization.Rd
man/mply_dbl.Rd
man/pd_lm.Rd
man/pd_lm.fit.Rd
man/pd_row_t_test.Rd
man/predict-proDAFit-method.Rd
man/proDA.Rd
man/proDAFit-class.Rd
man/proDA_package.Rd
man/reference_level.Rd
man/result_names.Rd
man/test_diff.Rd
tests/testthat.R
tests/testthat/test-calculate_distance.R
tests/testthat/test-design_parsing.R
tests/testthat/test-normalization.R
tests/testthat/test-pd_lm.R
tests/testthat/test-proDA.R
tests/testthat/test-proDAFit_S4.R
tests/testthat/test-test_diff.R
vignettes/.gitignore
vignettes/Introduction.Rmd
vignettes/data-import.Rmd
vignettes/figures/README-protein_dist-1.png
vignettes/figures/README-qc-mis_barplot-1.png
vignettes/figures/README-qc-raw_boxplot-1.png
vignettes/figures/README-sample_dist-1.png
vignettes/figures/README-screenshot_fit_functions.png
