Man pages for corinsexton/MAGNAMWAR
A Pipeline for Meta-Genome Wide Association
| after_ortho_format | Formatted output of OrthoMCL. |
| after_ortho_format_grps | Formatted output of OrthoMCL. |
| AnalyzeOrthoMCL | Main OrthoMCL Analysis |
| CalculatePrincipalCoordinates | Show Principal Components Breakdown |
| FormatAfterOrtho | Format file from output of OrthoMCL algorithm before use in... |
| FormatMCLFastas | Format all raw GenBank fastas to single OrthoMCL compatible... |
| joined_mtrx | Final output of join_repset. |
| joined_mtrx_grps | Final output of join_repset. |
| JoinRepSeq | Join Representative Sequences |
| ManhatGrp | Manhattan Plot of All Taxa |
| mcl_mtrx | Final output of AnalyzeOrthoMCL |
| mcl_mtrx_grps | Final output of AnalyzeOrthoMCL |
| pdgplot | Plot of a PDG and Data with Standard Error Bars |
| PDGvOG | Number of PDGs vs OGs/PDG |
| pheno_data | Triglyceride (TAG) content of fruit flies dataset. |
| phydataerror | Phylogenetic Tree with Attached Bar Plot and Standard Error... |
| printOGseqs | Print OG Sequences |
| qqplotter | QQPlot |
| RASTtogbk | Write RAST files to Genbank formats OrthoMCL Analysis |
| starv_pheno_data | Starvation rate of fruit flies dataset. |
| SurvAppendMatrix | Append Survival Test Outputs |
| WriteMCL | Print analyzed matrix |
