joined_mtrx: Final output of join_repset.
In corinsexton/MAGNAMWAR: A Pipeline for Meta-Genome Wide Association
Description
A data frame containing the final results of statistical analysis with
protein ids, annotations, and sequences added.
Usage
1
Format
A data frame with 17 rows and 11 variables:
- OG
taxa cluster id, as defined by OrthoMCL
- pval1
p-value, based on presence absence
- corrected_pval1
Bonferroni p-value, corrected by number of tests
- mean_OGContain
mean of all taxa phenotypes in that OG
- mean_OGLack
mean of all taxa phenotypes not in that OG
- taxa_contain
taxa in that cluster
- taxa_miss
taxa not in that cluster
- rep_taxon
randomly selected representative taxa from the cluster
- rep_id
protein id, from randomly selected representative taxa
- rep_annot
fasta annotation, from randomly selected representative taxa
- rep_seq
AA sequence, from randomly selected representative taxa
corinsexton/MAGNAMWAR documentation built on May 13, 2019, 10:51 p.m.
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Description
A data frame containing the final results of statistical analysis with protein ids, annotations, and sequences added.
Usage
1 |
Format
A data frame with 17 rows and 11 variables:
- OG
taxa cluster id, as defined by OrthoMCL
- pval1
p-value, based on presence absence
- corrected_pval1
Bonferroni p-value, corrected by number of tests
- mean_OGContain
mean of all taxa phenotypes in that OG
- mean_OGLack
mean of all taxa phenotypes not in that OG
- taxa_contain
taxa in that cluster
- taxa_miss
taxa not in that cluster
- rep_taxon
randomly selected representative taxa from the cluster
- rep_id
protein id, from randomly selected representative taxa
- rep_annot
fasta annotation, from randomly selected representative taxa
- rep_seq
AA sequence, from randomly selected representative taxa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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