Description Usage Arguments Value Examples
Print all protein sequences and annotations in a given OG
1 | PrintOGSeqs(after_ortho, OG, fasta_dir, out_dir = NULL, outfile = "none")
|
after_ortho |
output from FormatAfterOrtho |
OG |
name of OG |
fasta_dir |
directory to fastas |
out_dir |
complete path to output directory |
outfile |
name of file that will be written to |
A fasta file with all protein sequences and ids for a given OG
1 2 3 4 5 | OG <- 'OG5_126968'
dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
dir <- paste(dir,'/',sep='')
PrintOGSeqs(after_ortho_format, OG, dir)
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