Description Usage Arguments Value References Examples
Presents data for each taxa including standard error bars next to a phylogenetic tree.
1 2 | PhyDataError(phy, data, mcl_matrix, species_colname, data_colname,
color = NULL, OG = NULL, xlabel = "xlabel", ...)
|
phy |
Path to tree file |
data |
R object of phenotype data |
mcl_matrix |
AnalyzeOrthoMCL output |
species_colname |
name of column in data file with taxa designations |
data_colname |
name of column in data file with data observations |
color |
optional parameter, (defaults to NULL) assign colors to individual taxa by providing file (format: Taxa | Color) |
OG |
optional parameter, (defaults to NULL) a string with the names of chosen group to be colored |
xlabel |
string to label barplot's x axis |
... |
argument to be passed from other methods such as parameters from barplot() function |
A phylogenetic tree with a barplot of the data (with standard error bars) provided matched by taxa.
Some sort of reference
1 2 3 | file <- system.file('extdata', 'muscle_tree2.dnd', package='MAGNAMWAR')
PhyDataError(file, pheno_data, mcl_mtrx, species_colname = 'Treatment', data_colname = 'RespVar',
OG='OG5_126778', xlabel='TAG Content')
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.