Man pages for corwms/ZunderPipelineFunctions
Zunder Lab pipeline helper functions
| cluster_goodness | Take a dataset along with its cluster assignments and cluster... |
| consensus_and_stability | Get consensus clusters and measures of cluster stability.... |
| consensus_cluster_umap | Get UMAP layout for clustering of clusters. Temp function,... |
| get.clustering.annotate | Get clustering variables in legible format |
| get_jaccard_and_clusters | Get jaccard distance for cluster stability operations |
| get.plotting.annotate | Get panel variables in legible format |
| get.transform.annotate | Get marker names in more legibile format for... |
| get.transform.markers | Pull out markers for transformation |
| iterate_dbscan_clusters | Cluster Stability Testing/Quantification Subset and cluster... |
| iterate_louvain_clusters | Iterate through multiple rounds of louvain clustering |
| read.clustering.rep | Clustering replicate file input |
| read.clusters | Cluster file input |
| read.concat.transformed | Concat_Transformed file input |
| read.layout | Layout file input |
| read.metadata | Metadata file input |
| read.panel | Panel file input |
