consensus_and_stability: Get consensus clusters and measures of cluster stability....

Description Usage Arguments

View source: R/ClusterStabilityAnalysis.R

Description

Get consensus clusters and measures of cluster stability. Temp function to use Jaccard distance as input. Will replace consensus_and_stability after testing

Usage

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consensus_and_stability(clust_iter_list = NULL,
  clust_iter_table = NULL, jac_and_clusters = NULL)

Arguments

clust_iter_list

a list of lists. First level list is just all the iterations. Second level (inner) list is a list of each cluster, each one containing the indices of all the original datapoints assigned to that cluster

clust_iter_table

a matrix with each column as separate iteration of cluster assignments (same length as full or initially sampled dataset) –note that there should be NAs in this table because we want clustering iterations from samples of the dataset (to see how stable clusters are)

jac_and_clusters

df of jaccard distances and clusters, as outputted by get_jaccard_and_clusters


corwms/ZunderPipelineFunctions documentation built on Aug. 29, 2019, 4:17 p.m.