iterate_dbscan_clusters: Cluster Stability Testing/Quantification Subset and cluster...

Description Usage Arguments

View source: R/ClusterStabilityAnalysis.R

Description

Cluster Stability Testing/Quantification Subset and cluster multiple times (store cluster assignments in table) Then 1) find a way to assign universal names for clusters and 2) quantify cluster stability for each cluster, and also 3) quantify often each data point (cell) is assigned to its primary cluster Get dbscan clusters across multiple iterations

Usage

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iterate_dbscan_clusters(input_dataset = NULL, subsample_size = NULL,
  num_iterations = 50, minPts = 50)

Arguments

input_dataset

matrix to be clustered on

subsample_size

number of subsamples to take in each clustering iteration

num_iterations

number of rounds of clustering to test before stability analysis

minPts

hdbscan parameter


corwms/ZunderPipelineFunctions documentation built on Aug. 29, 2019, 4:17 p.m.