Man pages for cosmonet-package/COSMONET
Screening-network Cox methods for survival analysis
| Cosmonet | Survival prediction via screening-network Cox methods |
| CosmonetTesting | Make predictions on data |
| CosmonetTraining | Fit network-regularized Cox regression models on training set |
| CreateNetworkMatrix | Create network matrix by using the cancer-specific genes |
| GenerateNetwork | Generate a gene-network to perform a KEGG pathway analysis on... |
| HeatmapSurvGroup | Heatmaps of signature genes in low- and high-risk group |
| KEGG-repository | KEGG repository |
| MarginalCoxRanking | Marginal Cox ranking function |
| NormalizeBetweenData | Normalization between training and testing sets |
| Repository-tissue-specific-genes | Repository tissue-specific genes |
| ScreeningMethod | Screening methods (BMD-, DAD- and BMD+DAD-screening) |
| SelectOptimalCutoff | Determine the optimal cutpoint and draw survival curves |
| SplitData | Split dataset in training and testing set |
| ValidationTest | Prognostic index (PI) and Kaplan-Meier curves on testing set |
