ScreeningMethod: Screening methods (BMD-, DAD- and BMD+DAD-screening)

In cosmonet-package/COSMONET: Screening-network Cox methods for survival analysis

Description

This function computes the BMD, DAD and BMD+DAD-screening considering three different ranking cases in order to select the optimal threshold and optimize data prediction.

Usage

ScreeningMethod(
  x1,
  myList,
  screening = c("bmd", "dad", "bmd+dad"),
  ranking = NULL,
  thresh = NULL
)

Arguments

x1	input training matrix n1xp.
myList	list of cancer-specific genes.
screening	type of screening (BMD-, DAD- and BMD+DAD-screening).
ranking	ranking of genes that are highly-correlated with the patient survival. Default is ranking=NULL, i.e., for BMD-screening.
thresh	number of the ranked genes choosen. Default is thresh=NULL, i.e., for BMD-screening.

Value

A object contains the following list of genes:

screenVars

list of the screened genes.

cosmonet-package/COSMONET documentation built on Dec. 24, 2021, 9:12 p.m.