Man pages for courtiol/SileR
Survival Analysis of Elephants Using an Extension of the William Siler's Framework
| best_model_description | Provide information about the best model |
| boot_all_models | Refit all models several times on bootstrapped data |
| build_design_matrix | Build the design matrix |
| build_empty_design_matrix | Create an empty design matrix |
| build_param_matrix | Build the matrix storing parameters |
| build_param_names | Build the parameter names |
| compute_aic_w | Compute the AIC weights |
| compute_demography | Provide demographic information about the data |
| compute_estimates_average | Compute parameter estimates by model averaging |
| compute_indices | Compute the indices |
| compute_logLik | Compute the log-likelihood |
| compute_logLikC | C++ Function computing the log-likelihood |
| compute_survival_info | Provide survival information |
| ElesAll | The dataset of information at the individual level for all... |
| ElesCaptured | Datasets of information at the individual level for captured... |
| evidence_ratios_top_models | Build the table comparing the top models |
| expand_param_matrix | Expand the parameter matrix |
| fit | Fit the model |
| fit_all_models | Fit all 17 models |
| get_param_name | This function selects the names of parameters belonging to... |
| get_param_names_without_meta | This function trims out the meta suffix from the names of... |
| info_package | Provide some basic information about the code of the package |
| interpol_surv | Interpolate yearly survivorship |
| list_tables_boot | Build the list of tables showing the results of the... |
| logLik_from_design_matrix | Compute the log-likelihood from the design matrix |
| logLik_from_vector_param | Compute the log-likelihood from parameter vector |
| make_param_str_list | Create the list of parameter structures |
| median_lifespan | Compute the median lifespan |
| Models | The list of the fitted models |
| Models_boot | The list of the models refitted on bootstrapped data |
| parameters | Definition for parameters |
| plot_baseline | Plot the baseline mortality rate |
| plot_capture | Plot the effect of capture on the mortality rate |
| plot_captured_demog | Plot demographic information for the captured elephants |
| plot_survivorship | Plot the survivorship curves |
| predict | Predict mortality based on a single model |
| predict_avg | Predict mortality using model averaging |
| predict_captive_mortality | Predict the mortality of captive born individuals |
| predictor | Predict the probability of death |
| predictorC | C++ Function computing the predicted probabilities |
| predictorC_wrap | Predict the probability of death (R wrapper for C++) |
| prepare_data_for_capture_plot | Prepare the data for plotting the effect of capture on the... |
| save_xlsx | Save a table in the *.xlsx format |
| SileR-package | Survival Analysis of elephants using an extension of the... |
| SurvEles_small | A subset of the dataset for elephant survival |
| table_all_models | Build the table comparing all 17 models |
| table_boot | Build the table of the results of the non-parametric... |
| table_estimates | Build the table with model parameter estimates for all models |
| table_lifespan | Build the table with the predicted median lifespans. |
| table_model_averaging | Build the table of the results of the model averaging across... |
| table_SE | Build a table with the standard error of all parameter... |
| upload_on_drat | Build and upload the package on drat |
