| .add_date_column |
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| .add_noise |
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| .are_valid_argument_values |
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| .block_bootstrap |
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| .block_bootstrap_overlap_func |
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| .build_list_of_gradually_changing_delays |
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| .check_class |
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| .check_class_parameter_name |
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| .check_if_integer_value |
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| .check_if_integer_vector |
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| .check_if_noise |
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| .check_if_non_neg_integer_vector |
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| .check_if_non_negative_number |
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| .check_if_null_or_belongs_to_class |
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| .check_if_null_or_integer |
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| .check_if_number |
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| .check_if_positive_integer |
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| .check_if_positive_number |
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| .check_is_bootstrap_estimate |
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| .check_is_delay_distribution_matrix |
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| .check_is_empirical_delay_data |
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| .check_is_estimate |
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| .check_is_numeric_in_interval |
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| .check_is_probability_distr_vector |
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| .compute_Ot |
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| .compute_discretized_infectiousness |
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| .convolve_delay_distribution_matrices |
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| .convolve_delay_distribution_vector_with_matrix |
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| .convolve_delay_distribution_vectors |
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| .convolve_delay_distributions |
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| .convolve_two_delay_distributions |
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| .deconvolve_incidence_Richardson_Lucy |
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| .delay_distribution_matrix_rmse_compute |
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| .draw_It |
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| .estimate_Re_EpiEstim_piecewise_constant |
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| .estimate_Re_EpiEstim_sliding_window |
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| .generate_delay_data |
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| .get_arg_names |
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| .get_delay_distribution |
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| .get_delay_matrix_column |
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| .get_delay_matrix_from_delay_distributions |
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| .get_delays_over_full_time_units |
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| .get_discretized_distribution |
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|
| .get_distribution_function |
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|
| .get_distribution_parms |
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|
| .get_dots_as_list |
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| .get_infectiousness_profile |
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|
| .get_input_length |
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|
| .get_module_input |
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|
| .get_module_output |
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|
| .get_offset |
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| .get_quantiles |
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| .get_right_boundary_for_distribution_vector |
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| .get_shared_args |
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| .get_time_steps_quantile |
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| .get_values |
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| .is_list_of_outputs |
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| .is_numeric_vector |
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|
| .is_positive_numeric_vector |
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|
| .is_single_delay |
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| .is_valid_computation_ready_delay_object |
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|
| .is_valid_delay_object |
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| .is_valid_delay_single_or_list |
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| .is_valid_distribution |
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| .is_valid_module_input |
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| .is_value_in_accepted_values_vector |
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| .is_value_valid_time_step |
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| .left_augment_delay_distribution |
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| .make_empty_module_output |
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| .prettify_result |
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| .print_vector |
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| .random_round |
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| .sample_from_distribution |
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| .simplify_output |
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| .smooth_LOESS |
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|
| .summarise_CI_bootstrap |
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| .summarise_bagged_mean |
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| CH_simulated_linelist |
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|
| EST_incidence_data |
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|
| EpiEstim_wrapper |
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|
| HK_delay_data |
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|
| HK_incidence_data |
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|
| bootstrap_params |
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|
| bootstrap_return |
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|
| build_delay_distribution |
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|
| combining_observations |
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|
| convolve_delays |
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|
| dating |
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| deconvolve_incidence |
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|
| delay_empirical |
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| delay_high |
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| distribution |
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| do_uncertainty_summary |
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|
| empirical_delay_data_format |
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|
| estimate_Re |
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| estimate_Re_from_noisy_delayed_incidence |
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|
| estimate_from_combined_observations |
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|
| expect_delay_matrix_sums_lte_1 |
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| get_block_bootstrapped_estimate |
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|
| get_bootstrap_replicate |
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|
| get_bootstrapped_estimates_from_combined_observations |
Man page
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| get_infections_from_incidence |
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| get_matrix_from_empirical_delay_distr |
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| inner_addition |
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| inner_module |
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| left_addition |
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| leftpad_input |
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| make_tibble_from_output |
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| merge_outputs |
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| module_methods |
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| module_objects |
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| module_structure |
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|
| nowcast |
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|
| pipe_params |
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|
| simulate |
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| simulate_combined_observations |
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| simulate_delayed_observations |
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| simulate_infections |
Man page
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|
| smooth_incidence |
Man page
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|
| summarise_uncertainty |
Man page
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| uncertainty |
Man page
|
| universal_params |
Man page
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| validation_utility_params |
Man page
|
