detect.DR: COVID-19 Data Checking and Reparing (CDCAR)

In covid19-dashboard-us/cdcar: COVID-19 Data Checking and Repairing (CDCAR)

Description

This function detects the delay reporting issue of county/state level covid-19 data (or similar type of data including the count time series and epidemic data).

Usage

detect.DR(
  dat = list(),
  level = "county",
  state.show = NULL,
  county.show = NULL,
  log = FALSE,
  plot.show = FALSE,
  test = "wo"
)

Arguments

dat	A data frame or list containing the time series of infection or death cases.
level	Level of data for detection. Level "county" represents county level data, and level "state" means state level data. Default is set to "county".
state.show	Within the dataset, which state the detection algorithm should focus on. Default is set to NULL.
county.show	For county level data, which county the detection algorithm should focus on. Default is set to NULL.
log	Whether perform logarithm transform for the original data. Default is set to FALSE.
plot.show	Whether output plots to the console for sequence that is tested to have delay-reporting issue. Default is set to FALSE.
test	The test algorithm used for delay reporting detection. The available tests include the QS test (test = "qs"), Friedman test (test = "fried"), Kruskall-Wallis (test = "kw"), F-test on seasonal dummies (test = "seasdum") or the Welch test (test = "welch"). Default is set to be "wo".

Details

This R package is the implementation program for article entitled "Comparing and Integrating US COVID-19 Data from Multiple Sources: A County-Level Dataset with Local Features" by Guannan Wang, Zhiling Gu, Xinyi Li, Shan Yu, Myungjin Kim, Yueying Wang, Lei Gao, and Li Wang.

Value

A list containing the following information.
dat.sub The data which contains the information on the state/county specified.
dr.res A dataframe with the last column indicating whether the state/county has delay-reporting issue (0=No, 1=Yes).

covid19-dashboard-us/cdcar documentation built on Jan. 3, 2021, 4:58 p.m.