compute_similarity: Compute similarity based on trajectory

In covidclinical/Phase2.1TDAPseudotimeRPackage: Temporal Phenotyping via Topological Data Analysis and Pseudo Time

Description

Compute similarity based on trajectory

Usage

compute_similarity(
  processed_data,
  f_sim_map,
  f_graph,
  trajectories,
  verbose = TRUE
)

Arguments

processed_data	Dataframe. Processed from original data.
f_sim_map	TDAmapper object
f_graph	igraph object, out put from graph.adjacency.
trajectories	List of trajectories computed from shortest paths.
verbose	Boolean. Whether to print trajectory.

Value

Dataframe with different similarity measures

covidclinical/Phase2.1TDAPseudotimeRPackage documentation built on Sept. 27, 2020, 12:03 a.m.