make_graph: Make igraph object by calculating adjacency, resizing nodes,...

In covidclinical/Phase2.1TDAPseudotimeRPackage: Temporal Phenotyping via Topological Data Analysis and Pseudo Time

Description

Make igraph object by calculating adjacency, resizing nodes, weighting edges and color nodes.

Usage

make_graph(
  f_sim_map,
  f_time,
  color_method = "clust_color",
  my_colors = c("#00A3DD", "#60C659", "#FFBC21", "#FF7F1E", "#EF2B2D")
)

Arguments

f_sim_map	TDAmapper object
f_time	Dataframe of id and enrichment variable. Default is time (performing time enrichment). However, f_time can contain any other variable.
color_method	Character string specifying the coloring method. Can be 'basic', 'clust_shade' or 'clust_color'.
my_colors	Character vector of hex values specifying color palette for enrichment.

Value

igraph object of the graph output.

covidclinical/Phase2.1TDAPseudotimeRPackage documentation built on Sept. 27, 2020, 12:03 a.m.