Files in cozygene/TCA
Tensor Composition Analysis
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/TCA.R
R/model_fit.R
R/refactor.R
R/utils.R
README.md
assets/HumanMethylationSites.txt
inst/CITATION
inst/extdata/config.yml
man/refactor.Rd
man/tca.Rd
man/tcareg.Rd
man/tcasub.Rd
man/tensor.Rd
man/test_data.Rd
matlab/TCA.m
matlab/TCA_EWAS.m
matlab/TCA_fit_model.m
matlab/TCA_fit_model_W.m
matlab/TCA_fit_model_means_vars.m
matlab/conditional_model_minus_log_likelihood.m
matlab/create_interactions_matrix.m
matlab/demo/demo_W.txt
matlab/demo/demo_X.txt
matlab/demo/demo_y.txt
matlab/fit_conditional_model.m
matlab/fit_conditional_null_model.m
matlab/minus_log_likelihood_model_tau.m
matlab/minus_log_likelihood_sample.m
matlab/minus_log_likelihood_site.m
tests/assets/C1.txt
tests/assets/C2.txt
tests/assets/C3.txt
tests/assets/W.txt
tests/assets/W_hat.txt
tests/assets/W_noisy.txt
tests/assets/W_noisy_hat.txt
tests/assets/X.txt
tests/assets/Y.txt
tests/assets/Z1.txt
tests/assets/Z1_hat.txt
tests/assets/Z2.txt
tests/assets/Z2_hat.txt
tests/assets/Z3.txt
tests/assets/Z3_hat.txt
tests/assets/deltas.txt
tests/assets/deltas_hat.txt
tests/assets/effect_sizes.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_W.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_Y_fps_effect_size_1_W_noise_level_0.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_Y_joint_effect_size_10_W_noise_level_0.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_Y_joint_single_beta_effect_size_10_W_noise_level_0.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_Y_marginal_ct_1_effect_size_5_W_noise_level_0.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_Y_marginal_ct_3_effect_size_10_W_noise_level_0.txt
tests/assets/ewas/TCA_methylation_exp2_sim1_k_6_n_500_data.txt
tests/assets/gammas.txt
tests/assets/gammas_hat.txt
tests/assets/mus.txt
tests/assets/mus_hat.txt
tests/assets/refactor.R_est.adjusted.C.remove.txt
tests/assets/refactor.R_est.adjusted.txt
tests/assets/refactor.R_est.txt
tests/assets/refactor.ranked_list.adjusted.txt
tests/assets/refactor.ranked_list.txt
tests/assets/sigmas.txt
tests/assets/sigmas_hat.txt
tests/assets/tcareg_joint.alphas.txt
tests/assets/tcareg_joint.betas.txt
tests/assets/tcareg_joint.pvals.txt
tests/testthat.R
tests/testthat/test_refactor.R
tests/testthat/test_tca.R
tests/testthat/test_tca_fit.R
tests/testthat/test_tcasub.R
tests/testthat/test_test_data.R
vignettes/W.paquette.txt
vignettes/exp1.fig1.PNG
vignettes/exp1.fig2.PNG
vignettes/exp1.fig3.PNG
vignettes/exp1.fig4.PNG
vignettes/exp2.fig1.PNG
vignettes/exp2.fig2.PNG
vignettes/exp2.fig3.PNG
vignettes/exp2.fig4.PNG
vignettes/gender.paquette.txt
vignettes/hannum.chr22.RData
vignettes/liu.cd4.chr22.RData
vignettes/paquette.chr22.RData
vignettes/tca-vignette.Rmd
vignettes/vignette_analysis.R
