dot-ssrc.mascot: computes the correlation of predicted and measured retention...

In cpanse/NestLink: NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

computes the correlation of predicted and measured retention time

Description

this helper function computes a linear model between redicted and measured retention time of the as imput set given identified peptides.

TODO(cp): consider moving this method to the protViz package.

Usage

.ssrc.mascot(x, scores = c(10, 20, 40, 50), ...)

Arguments

x	as,data.frame.mascot generated data.frame object.
scores	default is c(10, 20, 40, 50).
...	passed to the plot function.

Value

a plot and summary

Author(s)

Christian Panse <[e-mail]>, 2017,2019

Examples

library(ExperimentHub)
eh <- ExperimentHub(); 
load(query(eh, c("NestLink", "F255744.RData"))[[1]])
.ssrc.mascot(F255744, scores = 15)

cpanse/NestLink documentation built on May 16, 2022, 2:33 a.m.