twoPatternReadFilter: Filter input sequences for two patterns

In cpanse/NestLink: NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Filter input sequences for two patterns

Description

Filter input sequences for two patterns

Usage

twoPatternReadFilter(reads, leftPattern, rightPattern, maxMismatch,
  prevPatternPos = NULL)

Arguments

reads	input sequences
leftPattern	left pattern motive.
rightPattern	right pattern motive.
maxMismatch	maximal number of miss matches.
prevPatternPos	prev pattern posiotion; default is set to NULL.

Value

list object

Examples

reads <- DNAStringSet(c('ACTGGGTTT','ACCCTGGGTTT'))
leftPattern <- 'CT'
rightPattern <- 'TTT'
maxMismatch <- 0
twoPatternReadFilter(reads, leftPattern, rightPattern, maxMismatch)

cpanse/NestLink documentation built on May 16, 2022, 2:33 a.m.