EnhancedVolcano2: Wrapper around 'EnhancedVolcano::EnhancedVolcano()'
In cparsania/parcutils: Utility Functions To Deal Day To Day Bioinformatics Tasks.

EnhancedVolcano2

R Documentation

Wrapper around `EnhancedVolcano::EnhancedVolcano()`

Description

Wrapper around EnhancedVolcano::EnhancedVolcano()

Usage

EnhancedVolcano2(
  toptable,
  lab,
  x,
  y,
  pCutoff = 0.001,
  FCcutoff = 1.5,
  col_by_regul = TRUE,
  col_up = "#b2182b",
  col_down = "#2166ac",
  col_others = "#e0e0e0",
  ...
)

Arguments

`toptable`	`toptable` `EnhancedVolcano::EnhancedVolcano()`
`lab`	`lab` `EnhancedVolcano::EnhancedVolcano()`
`x`	`x` `EnhancedVolcano::EnhancedVolcano()`
`y`	`y` `EnhancedVolcano::EnhancedVolcano()`
`pCutoff`	`pCutoff` `EnhancedVolcano::EnhancedVolcano()`
`FCcutoff`	`FCcutoff` `EnhancedVolcano::EnhancedVolcano()`
`col_by_regul`	lgl, default TRUE, whether to color variable by gene regulation - Up, Down, Other
`col_up`	a character string denoting color for up genes, works only when col_by_regul = `TRUE`.
`col_down`	a character string denoting color for down genes, works only when col_by_regul = `TRUE`.
`col_others`	a character string denoting color for other genes, works only when col_by_regul = `TRUE`.
`...`	Other parameters pass to `EnhancedVolcano::EnhancedVolcano()`