Man pages for cparsania/phyloR
Clean blast results for downstream phyloegentic analysis
| add_taxonomy_columns | Add ncbi taxonomy levels to ncbi protein accession |
| cat_green_tick | Print green tick on terminal. Wrapper function on... |
| filter_blast_hits | Filter blast hits |
| format_fasta_headers | Format fasta headers |
| genbank2uid_tbl | A Wrapper function around taxize::genbank2uid. |
| get_blast_outformat_7_colnames | Get blast output format 7 column names |
| get_cov | Calculate sequence coverage |
| get_query_cov | Calculate % query coverage. |
| get_subj_cov | Calculate % subject coverage. |
| get_taxon_rank | Get ncbi phylogeny level for a given ncbi taxonomy id. |
| null_or_character | Check value NULL or character |
| null_or_logical | Check value NULL or LOGICAL |
| null_or_numeric | Check value NULL or Numeric |
| remove_redundant_hits | Remove redundant hits from blast tabular output |
| subset_bstringset | Get records from BStringset |
| tidy_taxonomy_tree | Assign (NCBI) taxonomy levels to phylo convertible tibble. |
| tips_by_clade | Retrieve tree tips by clade (node) number from a phylogenetic... |
