get_taxon_rank: Get ncbi phylogeny level for a given ncbi taxonomy id.

In cparsania/phyloR: Clean blast results for downstream phyloegentic analysis

Description

Get ncbi phylogeny level for a given ncbi taxonomy id.

Usage

get_taxon_rank(x, rank = "kingdom")

Arguments

x	a vector of valid ncbi taxonomy id.
rank	a string denoting required ncbi phylogenetic level. Default "kingdom". An input can be one of the followings superkingdom kingdom phylum subphylum class subclass infraclass cohort order suborder infraorder superfamily family subfamily genus species tribe no rank

Value

a tbl with the below column.

1. query_taxon

2. kingdom

3. kingdom_id

4. rank

Examples

## Not run: 
x <- c(166361, 166361, 224129, 217634)
get_taxon_rank(x)

## End(Not run)

cparsania/phyloR documentation built on Aug. 6, 2020, 7:28 a.m.