cqgd/pky: Capture Hi-C calling algorithm

Peaky maps physical contacts between different regions of DNA by recognizing peaks in a Capture Hi-C (CHi-C) signal. It accounts for technical and biological noise, and subsequently finds DNA fragments around which the residual signal peaks and then decays with distance. The algorithm finds sets of locations at which peaks of varying strengths combinedly explain the normalized CHi-C signal.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version0.0.0.9001
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("cqgd/pky")
cqgd/pky documentation built on Nov. 19, 2018, 11:23 p.m.