Man pages for cqgd/pky
Capture Hi-C calling algorithm
| bin_interactions | Bins putative interactions by distance |
| bin_interactions_fs | Wrapper for bin_interactions() that interacts with the... |
| interpret_peaky | Interprets models fitted with peaky |
| interpret_peaky_fs | Wrapper for interpret_peaky() that interacts with the... |
| model_bin | Obtain readcounts adjusted for several forms of technical and... |
| model_bin_fs | Wrapper for model_bin() that interacts with the filesystem |
| peaky | Obtains peak locations and heights based on adjusted... |
| peaky_fs | Wrapper for peaky() that interacts with the filesystem |
| peaky_plot | Plot a Peaky fine-mapping result |
| peaky_prepare_from_chicago | Wrapper that prepares CHiCAGO output for Peaky analysis |
| peaky_run | Wrapper that fine-maps a bait's putative interactions |
| peaky_wrapup | Combines fine-mapping results for all baits into a table |
| rjmcmc_list | Create a list of peaky model files |
| split_baits | Regroups putative interactions by bait and calculates... |
| split_baits_fs | Wrapper for split_baits() that interacts with the filesystem |
