SCDC_basis: Basis Matrix

In crhisto/SCDC: Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets

Description

Basis matrix construction

Usage

SCDC_basis(x, ct.sub = NULL, ct.varname, sample)

Arguments

x	ExpressionSet object for single cells
ct.sub	a subset of cell types that are selected to construct basis matrix
ct.varname	variable name for 'cell types'
sample	variable name for subject/samples

Value

a list of basis matrix, sum of cell-type-specific library size, sample variance matrix, basis matrix by mvw, mvw matrix.

crhisto/SCDC documentation built on Dec. 19, 2021, 6:19 p.m.