iteration_over_clusters_default_parallelized: parallelization of the for the original procedure with some...
In crhisto/SCDC: Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets
Description
Usage
Arguments
Value
View source: R/Deconvolution.R
Description
parallelization of the for the original procedure with some additional lines for: 1. Show the selected genes. 2. Add parallelization. 3. Add logging function in a temporal file.
Usage
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iteration_over_clusters_default_parallelized(
ct.group,
LFC.lim,
sc.eset,
pseudocount.use,
core_number = NULL,
...
)
Arguments
ct.group
List of clusters that will be analyzed
LFC.lim
Foldchange limit for the comparison between each cluster amoung the others
sc.eset
ExpressionSet object for single cells
core_number
Number of cores that will be used for the process.
Value
List with the marker genes for all selected clusters
crhisto/SCDC documentation built on Dec. 19, 2021, 6:19 p.m.
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Description Usage Arguments Value
View source: R/Deconvolution.R
Description
parallelization of the for the original procedure with some additional lines for: 1. Show the selected genes. 2. Add parallelization. 3. Add logging function in a temporal file.
Usage
1 2 3 4 5 6 7 8 | iteration_over_clusters_default_parallelized(
ct.group,
LFC.lim,
sc.eset,
pseudocount.use,
core_number = NULL,
...
)
|
Arguments
ct.group |
List of clusters that will be analyzed |
LFC.lim |
Foldchange limit for the comparison between each cluster amoung the others |
sc.eset |
ExpressionSet object for single cells |
core_number |
Number of cores that will be used for the process. |
Value
List with the marker genes for all selected clusters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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