View source: R/sq.retrieve.indirect.R
sq.retrieve.indirect | R Documentation |
Downloads sequences from genbank (nucleotide database) for particular taxa
and genes into a folder called "0.Sequences"
.
sq.retrieve.indirect(acc.table, download.sqs = FALSE)
acc.table |
An accession table, ideally generated using |
download.sqs |
Logical indicating whether sequences should be downloaded locally or returned as a list. |
None
## Not run:
acc.table.retrieve(
clades = c('Felis', 'Vulpes', 'Phoca'),
species = 'Manis_pentadactyla' ,
genes = c("A2AB","ADORA3","ADRB2","APOB",
"APP","ATP7","BCHE","BDNF",
"BMI1","BRCA1","BRCA2","CNR1",
"COI","CREM","CYTB","DMP1",
"EDG1","ENAM","FBN1","GHR",
"IRBP","ND1","ND2","PLCB4",
"PNOC","RAG1a","RAG1b","RAG2",
"TTN","TYR1","VWF"),
speciesLevel=TRUE
)
sq.retrieve.indirect(test)
## End(Not run)
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