run_PF: Run PartitionFinder 1 from R
In cromanpa94/rPHYLOTA: Update Phylota Clusters
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Need to set the name of the folder within your Working directory that contains a set of fasta files (i.e., only MSA are allowed).
Usage
1
run_PF(folder = "ALI")
Arguments
folder
ALI: Folder ALISCORE; ali: Alignment folder; Any folder within your working directory.
Value
folder
"ALI"
Author(s)
Cristian Roman-Palacios
References
Lanfear, R., Calcott, B., Ho, S. Y., & Guindon, S. (2012). PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular biology and evolution, 29(6), 1695-1701.
Examples
1
2
3
4
5
## Not run:
run_PF(folder = "ALI")
## End(Not run)
cromanpa94/rPHYLOTA documentation built on Nov. 4, 2019, 9:18 a.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Need to set the name of the folder within your Working directory that contains a set of fasta files (i.e., only MSA are allowed).
Usage
1 | run_PF(folder = "ALI")
|
Arguments
folder |
ALI: Folder ALISCORE; ali: Alignment folder; Any folder within your working directory. |
Value
folder |
"ALI" |
Author(s)
Cristian Roman-Palacios
References
Lanfear, R., Calcott, B., Ho, S. Y., & Guindon, S. (2012). PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular biology and evolution, 29(6), 1695-1701.
Examples
1 2 3 4 5 | ## Not run:
run_PF(folder = "ALI")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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