Files in crukci-bioinformatics/rascal
Shiny app and functions for scaling relative copy number data to absolute values
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/fitting.R
R/plots.R
R/shiny_app.R
R/utils.R
README.md
data/copy_number.rda
data/genes.rda
docker/Dockerfile
docker/Makefile
docker/run.sh
docker/shell.sh
docker/shiny-server.conf
inst/extdata/copy_number_data.csv
inst/extdata/genes.csv
inst/extdata/ploidies_and_cellularities.csv
inst/scripts/extract_qdnaseq_copy_number_data.R
inst/scripts/fit_absolute_copy_numbers.R
inst/shiny/app.R
inst/shiny/copy_number_data.rds
inst/shiny/genes.csv
inst/shiny/ploidies_and_cellularities.csv
inst/shiny/www/CRUK_CI_logo.png
man/absolute_copy_number_distance.Rd
man/absolute_copy_number_distance_grid.Rd
man/absolute_copy_number_distance_heatmap.Rd
man/absolute_to_relative_copy_number.Rd
man/chromosome_copy_number_plot.Rd
man/chromosome_lengths.Rd
man/copy_number.Rd
man/copy_number_density.Rd
man/copy_number_density_plot.Rd
man/copy_number_maxima.Rd
man/copy_number_segments.Rd
man/distance_heatmap.Rd
man/find_best_fit_solutions.Rd
man/find_minimum.Rd
man/genes.Rd
man/genome_copy_number_plot.Rd
man/is_acceptable_ploidy_and_cellularity.Rd
man/relative_to_absolute_copy_number.Rd
man/start_shiny_app.Rd
man/tumour_fraction.Rd
rascal.Rproj
singularity/build.sh
singularity/run.sh
singularity/shiny-server.conf.template
vignettes/library.bib
vignettes/rascal.Rmd
