copy_number: Sample copy number data set

In crukci-bioinformatics/rascal: Shiny app and functions for scaling relative copy number data to absolute values

Description

A dataset containing copy number data for 2 samples obtained through shallow whole genome sequencing and processing using 30kb bins.

Usage

copy_number

Format

A data frame with 206398 rows and 6 variables:

sample

the name of the sample

chromosome

the chromosome

start

the start position of the bin within the chromosome

end

the end position of the bin within the chromosome

copy_number

the relative copy number for the bin

segmented

the segmented relative copy number for the bin

Details

Each row represents one bin, i.e. a window of 30 kilobases. The dataset contains both pre- and post-segmented copy number values. These are relative copy numbers, i.e. ratios of copy numbers to the average copy number, and have not been log2-transformed.

crukci-bioinformatics/rascal documentation built on Dec. 19, 2021, 6:21 p.m.