Man pages for crukci-bioinformatics/rascal
Shiny app and functions for scaling relative copy number data to absolute values
| absolute_copy_number_distance | Compute distance function for fitting relative copy numbers... |
| absolute_copy_number_distance_grid | Compute distance function for fitting relative copy numbers... |
| absolute_copy_number_distance_heatmap | Distance heat map for fitting a set of relative copy numbers |
| absolute_to_relative_copy_number | Convert absolute copy numbers to relative copy numbers |
| chromosome_copy_number_plot | Copy number plot for a single chromosome |
| chromosome_lengths | Obtain chromosome lengths |
| copy_number | Sample copy number data set |
| copy_number_density | Copy number density estimation |
| copy_number_density_plot | Copy number density plot |
| copy_number_maxima | Obtain maxima in a distribution of relative copy numbers. |
| copy_number_segments | Collapse copy number bins into segments |
| distance_heatmap | Heat map for given distances for grid of ploidies and... |
| find_best_fit_solutions | Find best fit solutions for fitting copy numbers through... |
| find_minimum | Find local minimum in distance function on fitting relative... |
| genes | Sample set of genes |
| genome_copy_number_plot | Copy number plot for the whole genome |
| is_acceptable_ploidy_and_cellularity | Determine if a given ploidy and cellularity for fitting copy... |
| relative_to_absolute_copy_number | Convert relative copy numbers to absolute copy numbers |
| start_shiny_app | Shiny app for absolute copy number scaling |
| tumour_fraction | Compute tumour DNA fraction for the given absolute copy... |
