Man pages for csbl-usp/mdp
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
| compute_gene_score | Compute gene score Computes gene scores for each gene within... |
| compute_perturbed_genes | Compute perturbed genes Find the top fraction of genes that... |
| compute_sample_scores | Compute sample scores for each pathway |
| compute_zscore | Computes the thresholded Z score Plots the Z score using... |
| example_data | Expression data example |
| example_pheno | Phenotypic data example |
| mdp | Molecular Degree of Perturbation |
| pathway_summary | print pathways generates a summary plot for pathways and... |
| sample_data | Sample score results |
| sample_plot | Plot sample scores Plots the sample scores data.frame for a... |
