compute_sample_scores: Compute sample scores for each pathway

Description Usage Arguments Value

View source: R/mdp.R

Description

Compute sample scores for each pathway

Usage

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compute_sample_scores(zscore, perturbed_genes, control_samples,
  test_samples, pathways, pdata)

Arguments

zscore

zscore data frame

perturbed_genes

list of pertured genes

control_samples

vector of control sample names

test_samples

vector of test sample names

pathways

list of pathways

pdata

phenotypic data with Sample and Class columns

Value

data frame of sample scores


csbl-usp/mdp documentation built on Aug. 7, 2021, 9:33 p.m.