findFFLs: Identifies feedforward loops in a network or in a set of...

Description Usage Arguments Details Value See Also Examples

View source: R/core.R

Description

Searches and counts feedforward loops for all nodes/edges in a network or in a set of networks.

Usage

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findFFLs(networks)

Arguments

networks

A network or a set of networks used for FFLs search

Details

This function searches feedforward loops (FFLs) in a specific network or in a set of networks. For each network, the returned results are stored in two corresponding data frames of node/edge attributes. Each data frame has one column for node/edge identifiers, and four columns contain corresponding number of all FFL motifs and number of FFL motifs with three different roles A, B and C. Another data frame of the network object, "network" data frame, contains total numbers of FFLs and coherent/incoherent FFLs in the network.

Value

The updated network objects including number of FFL motifs for each node/edge.

See Also

findFBLs, calCentrality, calSensitivity

Examples

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data(amrn)
amrn <- findFFLs(amrn)
print(amrn$nodes)
print(amrn$edges)
print(amrn$network)

csclab/RMut documentation built on May 14, 2019, 12:07 p.m.