Man pages for csglab/PhantomPurgeR
PhantomPurgeR
| estimate_hopping_rate | Step 4: estimate the sample index hopping rate (SIHR) |
| get_h5_filenames | Step 1: return named list of sample filepaths |
| join_data | Step 3: Create a datatable of gene-mapped read counts |
| make_plots | Step 6: make diagnostic plots |
| phantom_purger | A function wraper for running the PhantomPurgeR workflow in a... |
| PhantomPurgeR | PhantomPurgeR Workflow |
| plot_fit | Plot model fit |
| plot_molecules_distributions | Plot molecular proportions complexityprofile |
| plot_tor | Plot TOR curves |
| plot_tradeoff | Plot tradeoff |
| purge_phantoms | Step 5: Reassign hopped reads and purges phantom molecules |
| read10xMolInfoSamples | Step 2: load data from the molecule_info.h5 files |
