Man pages for csglab/PhantomPurgeR
PhantomPurgeR

estimate_hopping_rateStep 4: estimate the sample index hopping rate (SIHR)
get_h5_filenamesStep 1: return named list of sample filepaths
join_dataStep 3: Create a datatable of gene-mapped read counts
make_plotsStep 6: make diagnostic plots
phantom_purgerA function wraper for running the PhantomPurgeR workflow in a...
PhantomPurgeRPhantomPurgeR Workflow
plot_fitPlot model fit
plot_molecules_distributionsPlot molecular proportions complexityprofile
plot_torPlot TOR curves
plot_tradeoffPlot tradeoff
purge_phantomsStep 5: Reassign hopped reads and purges phantom molecules
read10xMolInfoSamplesStep 2: load data from the molecule_info.h5 files
csglab/PhantomPurgeR documentation built on Feb. 22, 2020, 8:11 a.m.