classification_features: Get mibcCPI classification features

In csgroen/mibcCPIclass: Classification of MIBC samples according to CPI-response related classes

Description

Returns a vector of 100 gene symbols with the classification features.

Usage

classification_features(
  gene_id = c("hgnc_symbol", "ensembl_gene_id", "entrezid")[1]
)

Arguments

gene_id

type of gene identifier. One of: 'hgnc_symbol', 'ensembl_gene_id', 'entrezid'. Default: 'hgnc_symbol

Details

Genes are: DDI2, ARHGEF10L, RAP1GAP, CYP4B1, LRRC8C, DPYD, CSF1, SLC16A1, PLEKHO1, FCER1G, FCGR2A, NCF2, SNRPE, SRGN, FAS, CHST15, TRIM22, PPFIBP2, CD44, SPI1, SERPING1, IL10RA, IFFO1, SLC38A1, RARG, ERBB3, GLIPR1, PLXNC1, SH2B3, STX2, RASA3, DHRS2, GNG2, SUSD6, ASB2, CCDC9B, ATP8B4, RAB27A, PLEKHO2, CIITA, TMC7, MT2A, GGT6, TMEM97, RAPGEFL1, FMNL1, EPN3, FAM20A, SPHK1, ENGASE, TUBB6, MOB3A, RASAL3, CYP4F22, JAK3, PLAUR, RRAS, LILRB2, CCDC88A, ARHGAP25, ARID5A, ZEB2, FMNL2, CYBRD1, ANKRD44, SIRPA, BCAS1, RBBP8NL, SAMSN1, CYTH4, TRIM71, MBNL1, GNB4, TLR1, TLR6, GPRIN3, ANXA5, OSMR, IL6ST, SGTB, CD14, CD74, ADAM19, DOCK2, PPP1R18, LRRC1, CD109, SOD2, FAM20C, JAZF1, MYO1G, ZYX, SNX31, JAK2, GLIPR2, TNC, TRAF1, NEK6, SCML2, MSN

Examples

classification_features()

csgroen/mibcCPIclass documentation built on Dec. 19, 2021, 6:22 p.m.