robustToxicitiesClass: The robustToxicitiesClass
In csmoxford/robustToxicities: Toxicity tables

Description Slots

This is core object of this package. This object stores the original dataset as well as the automatically cleaned dataset and a list of notes and queries generated when cleaning the dataset. A list of options is also provided to store plot and tabulation options and provide additional metadata. Finally treatment and cycle labels are also required.

toxData: The toxicitydataset
patientData: Patient level data
patidCol: Column name for the participant identifier
treatmentCol: Column name for the treatment
toxCategoryCol: Column name for aderse event category
toxNameCol: Column name for adverse event name
toxGradeCol: Column name for the adverse event grade
dateOfStartTox: Column name for date of adverse event start or change in grade
dateOfEndTox: Column name for date of adverse event end or change in grade
dateOfStartOfToxWindow: Column name for date of study entry (eg registration)
dateOfEndOfToxWindow: Column name for the end of the time window for the particitant to be observed for toxicities
periodDividerCols: Column names for date dividing times into periods or cycles (optional)
periodDividerLabels: Display names for data periodDividerCols
treatmentCodes: Codes which match the values in treatmentCol
treatmentLabels: Labels to used instea of the treatment codes
queries: A data.frame containing all the queries and note generated when loading the data
options: An s4 object of class toxicityOptions-class containing options and metadata for the files.
wasQueried: Logical detailing if queries were run on this object.