DuoClustering2018: DuoClustering2018

In csoneson/DuoClustering2018: Data, Clustering Results and Visualization Functions From Duò et al (2018)

DuoClustering2018

Description

Data package containing scRNA-seq data sets, clustering results and functions for summarizing the performance of different scRNA-seq clustering methods.

Details

This package contains publicly available scRNA-seq data sets and the accompanying results from clustering using general-purpose methods and scRNA-seq clustering methods. Several real data sets a well as simulated data sets are provided. The data sets have been used to evaluate the performance of clustering algorithms in our previous work and publication (Duò et al., F1000Research 2018). The data sets are available as SingleCellExperiment objects. For additional details on the data sets, see the help files for the respective data sets.

Additionally, the clustering results from the evaluation as well as functions for summarization and visualization of the clustering results are provided.

A description of the basic usage of the package for retrieving data sets and clustering results, and how to construct various plots summarizing the performance of different methods is outlined in the package vignettes.

Author(s)

Angelo Duò and Charlotte Sonesson

References

Duò, A., Robinson, M.D., and Soneson, C. (2018). A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research, 7:1141.

csoneson/DuoClustering2018 documentation built on July 4, 2023, 2:23 p.m.