Files in csoneson/SEE

Interactive SummarizedExperiment Explorer

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/check-bioc.yml

.github/workflows/publish_docker.yaml

CODE_OF_CONDUCT.md

DESCRIPTION

Dockerfile

LICENSE

NAMESPACE

NEWS.md R/AllClasses.R R/AllGenerics.R R/ExperimentColorMap.R R/bugs.R R/cleanDataset.R R/collapseBox.R R/constants.R R/createCustomPanels.R R/createLandingPage.R R/defaultTour.R R/family_ColumnDotPlot.R R/family_ColumnTable.R R/family_DotPlot.R R/family_Panel.R R/family_RowDotPlot.R R/family_RowTable.R R/family_Table.R R/filterDTColumn.R R/iSEE-main.R R/iSEE-options.R R/iSEE-pkg.R R/interface_hidden.R R/interface_panel.R R/interface_visual.R R/jitterPoints.R R/lassoPoints.R R/multiSelectionToFactor.R R/observers_brush.R R/observers_child.R R/observers_dimname.R R/observers_general.R R/observers_heatmap.R R/observers_hover.R R/observers_modal.R R/observers_org.R R/observers_param.R R/observers_select.R R/observers_table.R R/observers_voice.R R/observers_zoom.R R/outputs_general.R R/outputs_heatmap.R R/outputs_info.R R/outputs_plot.R R/outputs_table.R R/panelDefaults.R R/panel_ColumnDataPlot.R R/panel_ColumnDataTable.R R/panel_ComplexHeatmapPlot.R R/panel_FeatureAssayPlot.R R/panel_ReducedDimensionPlot.R R/panel_RowDataPlot.R R/panel_RowDataTable.R R/panel_SampleAssayPlot.R R/plotting.R R/registerAppOptions.R R/shinyjs.R R/subsetPointsByGrid.R R/utils_brush.R R/utils_class.R R/utils_colors.R R/utils_commands.R R/utils_links.R R/utils_name.R R/utils_range.R R/utils_reactive.R R/utils_select.R R/utils_text.R R/utils_tooltip.R R/utils_tour.R R/utils_tracker.R R/voice.R R/zzz.R README.md

_pkgdown.yml

codecov.yml

inst/CITATION

inst/www/Bioconductor-loader.gif

inst/www/Bug/fly-sprite.png

inst/www/Bug/spider-sprite.png

inst/www/annyang.min.js

inst/www/bug-min.js

inst/www/collapseBox.js

inst/www/iSEE.css

inst/www/iSEE.png

inst/www/voice.js

man/.gitignore

man/ColumnDataPlot-class.Rd man/ColumnDataTable-class.Rd man/ColumnDotPlot-class.Rd man/ColumnTable-class.Rd man/ComplexHeatmapPlot-class.Rd man/DotPlot-class.Rd man/ExperimentColorMap-class.Rd man/FeatureAssayPlot-class.Rd man/Panel-class.Rd man/ReducedDimensionPlot-class.Rd man/RowDataPlot-class.Rd man/RowDataTable-class.Rd man/RowDotPlot-class.Rd man/RowTable-class.Rd man/SampleAssayPlot-class.Rd man/Table-class.Rd man/addCustomLabelsCommands.Rd man/addLabelCentersCommands.Rd man/addMultiSelectionCommands.Rd man/addTourStep.Rd man/aes-utils.Rd man/cache-utils.Rd man/checkColormapCompatibility.Rd man/class-utils.Rd man/cleanDataset.Rd man/collapseBox.Rd man/conditional-utils.Rd man/constants.Rd man/createCustomDimnamesModalObservers.Rd man/createCustomPanels.Rd man/createLandingPage.Rd man/createProtectedParameterObservers.Rd man/defaultTour.Rd man/documentation-generics.Rd man/extractAssaySubmatrix.Rd man/filterDTColumn.Rd man/getEncodedName.Rd man/getPanelColor.Rd man/iSEE-pkg.Rd man/iSEE.Rd man/iSEEOptions.Rd man/interface-generics.Rd man/interface-wrappers.Rd man/jitterPoints.Rd man/labs-utils.Rd man/lassoPoints.Rd man/manage_commands.Rd man/metadata-plot-generics.Rd man/multi-select-generics.Rd man/multiSelectionToFactor.Rd man/observer-generics.Rd man/output-generics.Rd man/panelDefaults.Rd man/plot-generics.Rd man/plot-utils.Rd man/processMultiSelections.Rd man/registerAppOptions.Rd man/removeInvalidChoices.Rd man/replaceMissingWithFirst.Rd man/requestUpdate.Rd man/retrieveOutput.Rd man/selectionColorMap.Rd man/setCachedCommonInfo.Rd man/setup-generics.Rd man/single-select-generics.Rd man/specific-tours.Rd man/subsetPointsByGrid.Rd man/synchronizeAssays.Rd man/table-generics.Rd man/track-utils.Rd man/validate-utils.Rd man/visual-parameters-generics.Rd tests/testthat.R

tests/testthat/.gitignore

tests/testthat/setup_classes.R tests/testthat/setup_ecm.R tests/testthat/setup_lasso.R tests/testthat/setup_mimic_live_app.R tests/testthat/setup_sce.R tests/testthat/test_ColumnDataPlot.R tests/testthat/test_DotPlot_generics.R tests/testthat/test_ExperimentColorMap.R tests/testthat/test_FeatureAssayPlot.R tests/testthat/test_RowDataPlot.R tests/testthat/test_SampleAssayPlot.R tests/testthat/test_api.R tests/testthat/test_brush.R tests/testthat/test_bugs.R tests/testthat/test_clean.R tests/testthat/test_code_tracker.R tests/testthat/test_custom.R tests/testthat/test_defaults.R tests/testthat/test_deprecated.R tests/testthat/test_dimnames.R tests/testthat/test_filter_table.R tests/testthat/test_groupable.R tests/testthat/test_heatmap.R tests/testthat/test_hover.R tests/testthat/test_iSEE-init.R tests/testthat/test_iSEE-main.R tests/testthat/test_jitter.R tests/testthat/test_landing_page.R tests/testthat/test_lasso.R tests/testthat/test_link_graph.R tests/testthat/test_multi_select.R tests/testthat/test_multiselect_factor.R tests/testthat/test_names.R tests/testthat/test_observers.R tests/testthat/test_outputs.R tests/testthat/test_panelDefaults.R tests/testthat/test_plotting.R tests/testthat/test_registerAppOptions.R tests/testthat/test_report_memory.R tests/testthat/test_show.R tests/testthat/test_subset_grid.R tests/testthat/test_table.R tests/testthat/test_tour.R tests/testthat/test_ui.R tests/testthat/test_utils.R tests/testthat/test_voice.R tests/testthat/test_zzz.R vignettes/basic.Rmd vignettes/bigdata.Rmd vignettes/configure.Rmd vignettes/custom.Rmd vignettes/ecm.Rmd

vignettes/iSEE.bib

vignettes/links.Rmd

vignettes/screenshots/basic-demo.png

vignettes/screenshots/bigdata-downsample.png

vignettes/screenshots/bigdata-downsample2.png

vignettes/screenshots/bigdata-hdf5.png

vignettes/screenshots/configure-CDP-basic.png

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vignettes/screenshots/configure-CDP-linked-visual.png

vignettes/screenshots/configure-CDP-visual.png

vignettes/screenshots/configure-FAP-assay.png

vignettes/screenshots/configure-FAP-basic.png

vignettes/screenshots/configure-FAP-preset-genes.png

vignettes/screenshots/configure-FAP-xaxis.png

vignettes/screenshots/configure-ReDP-basic.png

vignettes/screenshots/configure-ReDP-lasso.png

vignettes/screenshots/configure-ReDP-select.png

vignettes/screenshots/custom-heat.png

vignettes/screenshots/custom-plot.png

vignettes/screenshots/custom-table.png

vignettes/screenshots/ecm-demo.png

vignettes/screenshots/links-dynamic-multi.png

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vignettes/screenshots/links-dynamic-single.png

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vignettes/screenshots/links-multi-color.png

vignettes/screenshots/links-multi-lasso.png

vignettes/screenshots/links-multi-naive.png

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vignettes/screenshots/links-multi-saved.png

vignettes/screenshots/links-multi-table.png

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vignettes/screenshots/links-multi-unselected.png

vignettes/screenshots/links-single-color.png

vignettes/screenshots/links-single-plot2plot.png

vignettes/screenshots/links-single-sample.png

vignettes/screenshots/links-single-yaxis.png

vignettes/voice.Rmd

csoneson/SEE documentation built on April 4, 2024, 1:48 p.m.