Files in csoneson/jcc
Calculate JCC Scores
.github/workflows/R-CMD-check.yaml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/calculateJCCScores.R
R/combineCoverages.R
R/fitAlpineBiasModel.R
R/plotGeneSummary.R
R/predictTxCoverage.R
R/scaleTxCoverages.R
README.md
inst/extdata/Homo_sapiens.GRCh38.90.chr22.gtf.gz
inst/extdata/quant.sub.rds
inst/extdata/reads.chr22.bam
inst/extdata/reads.chr22.bam.bai
inst/extdata/reads.chr22.bw
inst/extdata/sub.SJ.out.tab
inst/extdata/tx2gene.sub.rds
man/calculateJCCScores.Rd
man/combineCoverages.Rd
man/fitAlpineBiasModel.Rd
man/gthr.Rd
man/junctionScore.Rd
man/plotGeneSummary.Rd
man/predictTxCoverage.Rd
man/scaleTxCoverages.Rd
man/scaledCoverage.Rd
tests/testthat.R
tests/testthat/test-jcc-calc.R
vignettes/JCCscore.Rmd
vignettes/jcc.bib
vignettes/study_design.png
