gthr: Weight function
In csoneson/jcc: Calculate JCC Scores

gthr	R Documentation

Weight function

Description

Function to determine the weight for a junction in the calculation of the JCC scores and the scaled coverages. This function is used by junctionScore and scaledCoverage, and does not have to be called by the user.

Usage

gthr(omega, thr)

Arguments

`omega`	Fraction of uniquely mapped reads among those spanning the junction.
`thr`	Threshold value. If `omega` is above this value, the junction contributes to the JCC score of the gene. If `omega` is below this value, the junction doesn't contribute.