Man pages for csoneson/jcc
Calculate JCC Scores
| calculateJCCScores | Calculate scaled coverages and JCC scores |
| combineCoverages | Combine observed and predicted coverages |
| fitAlpineBiasModel | Fit fragment bias model with alpine |
| gthr | Weight function |
| junctionScore | Help function for JCC score calculation |
| plotGeneSummary | Plot JCC score summary for a given gene |
| predictTxCoverage | Predict coverage profiles of transcripts |
| scaledCoverage | Help function for calculation of scaled junction coverages |
| scaleTxCoverages | Scale transcript coverages by abundance estimate |
