Files in cstawitz/spatiotemporalBSAIgrowth

Analyze Growth in Bering Sea Groundfish

CalCurrentAnalysis.R CalCurrent_Example.R Config_files/vast_config.R Config_files/vast_config_CC.R Config_files/vast_config_arrow.R Config_files/vast_config_arrowtooth.R Config_files/vast_config_atka.R Config_files/vast_config_boc.R Config_files/vast_config_chili.R Config_files/vast_config_covariates.R Config_files/vast_config_dbrock.R Config_files/vast_config_flathead.R Config_files/vast_config_hake.R Config_files/vast_config_lcod.R Config_files/vast_config_multi.R Config_files/vast_config_multi_2fac.R Config_files/vast_config_multi_2fac_2s.R Config_files/vast_config_multi_2fac_2s_2st.R Config_files/vast_config_multi_2fac_2s_3st.R Config_files/vast_config_multi_2fac_3s.R Config_files/vast_config_multi_2fac_3s_2st.R Config_files/vast_config_multi_2fac_3s_4st.R Config_files/vast_config_multi_2fac_3s_4st_ar.R Config_files/vast_config_multi_2fac_3s_4st_finescale.R Config_files/vast_config_multi_2fac_3st.R Config_files/vast_config_multi_3fac.R Config_files/vast_config_multi_4fac.R Config_files/vast_config_multi_4fac_2st.R Config_files/vast_config_multi_4fac_3st.R Config_files/vast_config_multi_4fac_4s_4st.R Config_files/vast_config_multi_IID.R Config_files/vast_config_nrocksole.R Config_files/vast_config_pcod.R Config_files/vast_config_pet.R Config_files/vast_config_pollock.R Config_files/vast_config_pop.R Config_files/vast_config_sable.R Config_files/vast_config_spatiotemporal.R Config_files/vast_config_yellowfin.R DFA.R DFA_loadings_trend.R DensityCalc.R Manuscript.Rmd R/build_corrected_df.R R/check_dat.R R/color_palette.R R/create_data.R R/create_est_table.R R/data_plot_functions.R R/data_process.R R/get_DFA_fits.R R/get_each_age.R R/get_length_cv_age.R R/get_length_weight.R R/get_unbiased_lengths.R R/plot_loadings.R R/read_results.R R/run_multi_spp.R R/run_one_spp.R README.md VASTDFA_loadings_trend.R VASTDFA_spatial_loadings.R analysis.R color_palette.R data/CalCurrDataList.Rmd data/CalCurrDataListOlder.Rmd dfa_fits.R factor_repro.R just_data.R minimalExample.R plotting.R post_analysis.R preprocess_CC_data.R setup_pkgs.R test4debug.R trendplot.R