preprocessGSE: Preprocess GSE Dataset
In ctlab/LinSeed: Linear Subpsace identification to solve complete gene expression deconvolution problem
Description
Usage
Arguments
Value
Description
Downloads GSE dataset by GEO accession and performs preprocessing
Usage
1
preprocessGSE(geoAccesion, annotate = TRUE, normalize = TRUE, ...)
Arguments
geoAccesion
e.g 'GSE19830'
annotate
annotate with feature data from provided geo platform
normalize
quantile normalize GEO dataset
...
arguments further passed to preprocessDataset
Value
clustered dataset, matrix, first column identifies cluster of the row
ctlab/LinSeed documentation built on Aug. 9, 2019, 4:33 p.m.
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Description Usage Arguments Value
Description
Downloads GSE dataset by GEO accession and performs preprocessing
Usage
1 | preprocessGSE(geoAccesion, annotate = TRUE, normalize = TRUE, ...)
|
Arguments
geoAccesion |
e.g 'GSE19830' |
annotate |
annotate with feature data from provided geo platform |
normalize |
quantile normalize GEO dataset |
... |
arguments further passed to preprocessDataset |
Value
clustered dataset, matrix, first column identifies cluster of the row
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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