Files in cttedwards/seabird2
Read and write SeaBird files in R
.gitattributes
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R/SeaBird.R
R/SeaBird.convert.lines.to.matrix.R
R/SeaBird.convert.to.lines.R
R/SeaBird.get.classes.R
R/SeaBird.get.lines.R
R/SeaBird.inR.R
R/SeaBird.inS.R
R/SeaBird.is.whole.number.R
R/SeaBird.isin.R
R/SeaBird.make.filename.R
R/SeaBird.make.list.R
R/SeaBird.make.sbd.commands.R
R/SeaBird.make.table.R
R/SeaBird.populate.tmatrix.R
R/SeaBird.pos.R
R/SeaBird.pos.match.R
R/SeaBird.recodevector.R
R/SeaBird.regexp.in.R
R/SeaBird.regexpr.R
R/SeaBird.remove.first.words.R
R/SeaBird.remove.last.words.R
R/SeaBird.string.to.vector.of.numbers.R
R/SeaBird.string.to.vector.of.words.R
R/SeaBird.tmatrix-class.R
R/SeaBird.trim.lines.R
R/SeaBird.unpaste.R
R/SeaBird.write.mark.recapture.R
R/SeaBird.write_blocks.R
R/add.command.with.argument.R
R/add.command.with.autonumber.R
R/add.command.with.label.R
R/add.command.with.nolabel.R
R/extract.aic.R
R/extract.classes.R
R/extract.correlation.matrix.R
R/extract.covariance.matrix.R
R/extract.fits.R
R/extract.free.parameters.R
R/extract.header.R
R/extract.initial.state.R
R/extract.mcmc.R
R/extract.objective.function.R
R/extract.profiles.R
R/extract.projection.R
R/extract.quantities.1.R
R/extract.quantities.2.R
R/extract.quantities.3.R
R/extract.quantities.4.R
R/extract.quantities.5.R
R/extract.quantities.6.R
R/extract.quantities.R
R/extract.quantities.actural_catches.R
R/extract.quantities.base.parameter.values.R
R/extract.quantities.derived.parameter.values.R
R/extract.quantities.fishing_pressures.R
R/extract.quantities.from.table.R
R/extract.quantities.initialisation_at_class.R
R/extract.quantities.lambda.R
R/extract.quantities.mapped.initialisation_parameters.R
R/extract.quantities.mapped.resight_p.parameters.R
R/extract.quantities.mapped.selectivity.parameters.R
R/extract.quantities.mapped.survival.parameters.R
R/extract.quantities.mapped.transition.parameters.R
R/extract.quantities.mark_recapture.R
R/extract.quantities.recruitment_at_class.R
R/extract.quantities.resight_p_at_class.R
R/extract.quantities.scalar.parameter.values.R
R/extract.quantities.selectivity_at_class.R
R/extract.quantities.survival_at_class.R
R/extract.quantities.total_survival_at_class.R
R/extract.quantities.transition_at_class.R
R/extract.quantities.vector.parameter.values.R
R/extract.sbd.file.R
R/get.sbd.command.R
R/mr.optimiser.R
R/sbd.commands.R
R/set.command.with.autonumber.R
R/set.command.with.label.R
R/set.command.with.nolabel.R
R/write.sbd.file.R
README.md
examples/antips/R/01_clean_mrdata.R
examples/antips/R/02_make_mrdat.R
examples/antips/R/03_make_transition_matrix.R
examples/antips/R/04_make_mrobs.R
examples/antips/R/05_make_mr_block.R
examples/antips/R/06_make_transition_block.R
examples/antips/R/07_make_marks_resights_data_frame.R
examples/antips/R/utils/tighten.r
examples/antips/data-raw/antips_mrdata.txt
examples/antips/data/census.Rdata
examples/antips/data/clean_mrdata.Rdata
examples/antips/data/marks_knownage.Rdata
examples/antips/data/marks_unknownage.Rdata
examples/antips/data/mrdat.Rdata
examples/antips/data/mrdata.Rdata
examples/antips/data/mrobs_knownage.Rdata
examples/antips/data/mrobs_unknownage.Rdata
examples/antips/data/resights_knownage.Rdata
examples/antips/data/resights_unknownage.Rdata
examples/antips/data/transition_matrix.Rdata
examples/antips/sbd/classes_block.sbd
examples/antips/sbd/mrdata_knownage.block.sbd
examples/antips/sbd/mrdata_unknownage.block.sbd
examples/antips/sbd/transition_block.sbd
man/SeaBird.Rd
man/SeaBird.convert.lines.to.matrix.Rd
man/SeaBird.convert.to.lines.Rd
man/SeaBird.get.classes.Rd
man/SeaBird.get.lines.Rd
man/SeaBird.inR.Rd
man/SeaBird.inS.Rd
man/SeaBird.is.whole.number.Rd
man/SeaBird.isin.Rd
man/SeaBird.make.filename.Rd
man/SeaBird.make.list.Rd
man/SeaBird.make.sbd.commands.Rd
man/SeaBird.make.table.Rd
man/SeaBird.pos.Rd
man/SeaBird.pos.match.Rd
man/SeaBird.recodevector.Rd
man/SeaBird.regexp.in.Rd
man/SeaBird.regexpr.Rd
man/SeaBird.remove.first.words.Rd
man/SeaBird.remove.last.words.Rd
man/SeaBird.string.to.vector.of.numbers.Rd
man/SeaBird.string.to.vector.of.words.Rd
man/SeaBird.trim.lines.Rd
man/SeaBird.unpaste.Rd
man/SeaBird.write_mark_recapture.Rd
man/add.command.with.argument.Rd
man/add.command.with.autonumber.Rd
man/add.command.with.label.Rd
man/add.command.with.nolabel.Rd
man/extract.aic.Rd
man/extract.classes.Rd
man/extract.correlation.matrix.Rd
man/extract.covariance.matrix.Rd
man/extract.fits.Rd
man/extract.free.parameters.Rd
man/extract.header.Rd
man/extract.initial.state.Rd
man/extract.mcmc.Rd
man/extract.objective.function.Rd
man/extract.profiles.Rd
man/extract.projection.Rd
man/extract.quantities.1.Rd
man/extract.quantities.2.Rd
man/extract.quantities.3.Rd
man/extract.quantities.4.Rd
man/extract.quantities.5.Rd
man/extract.quantities.6.Rd
man/extract.quantities.Rd
man/extract.quantities.actural_catches.Rd
man/extract.quantities.base.parameter.values.Rd
man/extract.quantities.derived.parameter.values.Rd
man/extract.quantities.fishing_pressures.Rd
man/extract.quantities.from.table.Rd
man/extract.quantities.initialisation_at_class.Rd
man/extract.quantities.lambda.Rd
man/extract.quantities.mapped.initialisation_parameters.Rd
man/extract.quantities.mapped.resight_p.parameters.Rd
man/extract.quantities.mapped.selectivity.parameters.Rd
man/extract.quantities.mapped.survival.parameters.Rd
man/extract.quantities.mapped.transition.parameters.Rd
man/extract.quantities.mark_recapture.Rd
man/extract.quantities.recruitment_at_class.Rd
man/extract.quantities.resight_p_at_class.Rd
man/extract.quantities.scalar.parameter.values.Rd
man/extract.quantities.selectivity_at_class.Rd
man/extract.quantities.survival_at_class.Rd
man/extract.quantities.total_survival_at_class.Rd
man/extract.quantities.transition_at_class.Rd
man/extract.quantities.vector.parameter.values.Rd
man/extract.sbd.file.Rd
man/get.sbd.command.Rd
man/mr.optimiser.Rd
man/populate.Rd
man/sbd.commands.Rd
man/set.command.with.autonumber.Rd
man/set.command.with.label.Rd
man/set.command.with.nolabel.Rd
man/tmatrix-class.Rd
man/write.sbd.file.Rd
man/write_blocks.Rd
