Files in cttedwards/seabird2
Read and write SeaBird files in R

.gitattributes
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R/SeaBird.R R/SeaBird.convert.lines.to.matrix.R R/SeaBird.convert.to.lines.R R/SeaBird.get.classes.R R/SeaBird.get.lines.R R/SeaBird.inR.R R/SeaBird.inS.R R/SeaBird.is.whole.number.R R/SeaBird.isin.R R/SeaBird.make.filename.R R/SeaBird.make.list.R R/SeaBird.make.sbd.commands.R R/SeaBird.make.table.R R/SeaBird.populate.tmatrix.R R/SeaBird.pos.R R/SeaBird.pos.match.R R/SeaBird.recodevector.R R/SeaBird.regexp.in.R R/SeaBird.regexpr.R R/SeaBird.remove.first.words.R R/SeaBird.remove.last.words.R R/SeaBird.string.to.vector.of.numbers.R R/SeaBird.string.to.vector.of.words.R R/SeaBird.tmatrix-class.R R/SeaBird.trim.lines.R R/SeaBird.unpaste.R R/SeaBird.write.mark.recapture.R R/SeaBird.write_blocks.R R/add.command.with.argument.R R/add.command.with.autonumber.R R/add.command.with.label.R R/add.command.with.nolabel.R R/extract.aic.R R/extract.classes.R R/extract.correlation.matrix.R R/extract.covariance.matrix.R R/extract.fits.R R/extract.free.parameters.R R/extract.header.R R/extract.initial.state.R R/extract.mcmc.R R/extract.objective.function.R R/extract.profiles.R R/extract.projection.R R/extract.quantities.1.R R/extract.quantities.2.R R/extract.quantities.3.R R/extract.quantities.4.R R/extract.quantities.5.R R/extract.quantities.6.R R/extract.quantities.R R/extract.quantities.actural_catches.R R/extract.quantities.base.parameter.values.R R/extract.quantities.derived.parameter.values.R R/extract.quantities.fishing_pressures.R R/extract.quantities.from.table.R R/extract.quantities.initialisation_at_class.R R/extract.quantities.lambda.R R/extract.quantities.mapped.initialisation_parameters.R R/extract.quantities.mapped.resight_p.parameters.R R/extract.quantities.mapped.selectivity.parameters.R R/extract.quantities.mapped.survival.parameters.R R/extract.quantities.mapped.transition.parameters.R R/extract.quantities.mark_recapture.R R/extract.quantities.recruitment_at_class.R R/extract.quantities.resight_p_at_class.R R/extract.quantities.scalar.parameter.values.R R/extract.quantities.selectivity_at_class.R R/extract.quantities.survival_at_class.R R/extract.quantities.total_survival_at_class.R R/extract.quantities.transition_at_class.R R/extract.quantities.vector.parameter.values.R R/extract.sbd.file.R R/get.sbd.command.R R/mr.optimiser.R R/sbd.commands.R R/set.command.with.autonumber.R R/set.command.with.label.R R/set.command.with.nolabel.R R/write.sbd.file.R README.md examples/antips/R/01_clean_mrdata.R examples/antips/R/02_make_mrdat.R examples/antips/R/03_make_transition_matrix.R examples/antips/R/04_make_mrobs.R examples/antips/R/05_make_mr_block.R examples/antips/R/06_make_transition_block.R examples/antips/R/07_make_marks_resights_data_frame.R examples/antips/R/utils/tighten.r
examples/antips/data-raw/antips_mrdata.txt
examples/antips/data/census.Rdata
examples/antips/data/clean_mrdata.Rdata
examples/antips/data/marks_knownage.Rdata
examples/antips/data/marks_unknownage.Rdata
examples/antips/data/mrdat.Rdata
examples/antips/data/mrdata.Rdata
examples/antips/data/mrobs_knownage.Rdata
examples/antips/data/mrobs_unknownage.Rdata
examples/antips/data/resights_knownage.Rdata
examples/antips/data/resights_unknownage.Rdata
examples/antips/data/transition_matrix.Rdata
examples/antips/sbd/classes_block.sbd
examples/antips/sbd/mrdata_knownage.block.sbd
examples/antips/sbd/mrdata_unknownage.block.sbd
examples/antips/sbd/transition_block.sbd
man/SeaBird.Rd man/SeaBird.convert.lines.to.matrix.Rd man/SeaBird.convert.to.lines.Rd man/SeaBird.get.classes.Rd man/SeaBird.get.lines.Rd man/SeaBird.inR.Rd man/SeaBird.inS.Rd man/SeaBird.is.whole.number.Rd man/SeaBird.isin.Rd man/SeaBird.make.filename.Rd man/SeaBird.make.list.Rd man/SeaBird.make.sbd.commands.Rd man/SeaBird.make.table.Rd man/SeaBird.pos.Rd man/SeaBird.pos.match.Rd man/SeaBird.recodevector.Rd man/SeaBird.regexp.in.Rd man/SeaBird.regexpr.Rd man/SeaBird.remove.first.words.Rd man/SeaBird.remove.last.words.Rd man/SeaBird.string.to.vector.of.numbers.Rd man/SeaBird.string.to.vector.of.words.Rd man/SeaBird.trim.lines.Rd man/SeaBird.unpaste.Rd man/SeaBird.write_mark_recapture.Rd man/add.command.with.argument.Rd man/add.command.with.autonumber.Rd man/add.command.with.label.Rd man/add.command.with.nolabel.Rd man/extract.aic.Rd man/extract.classes.Rd man/extract.correlation.matrix.Rd man/extract.covariance.matrix.Rd man/extract.fits.Rd man/extract.free.parameters.Rd man/extract.header.Rd man/extract.initial.state.Rd man/extract.mcmc.Rd man/extract.objective.function.Rd man/extract.profiles.Rd man/extract.projection.Rd man/extract.quantities.1.Rd man/extract.quantities.2.Rd man/extract.quantities.3.Rd man/extract.quantities.4.Rd man/extract.quantities.5.Rd man/extract.quantities.6.Rd man/extract.quantities.Rd man/extract.quantities.actural_catches.Rd man/extract.quantities.base.parameter.values.Rd man/extract.quantities.derived.parameter.values.Rd man/extract.quantities.fishing_pressures.Rd man/extract.quantities.from.table.Rd man/extract.quantities.initialisation_at_class.Rd man/extract.quantities.lambda.Rd man/extract.quantities.mapped.initialisation_parameters.Rd man/extract.quantities.mapped.resight_p.parameters.Rd man/extract.quantities.mapped.selectivity.parameters.Rd man/extract.quantities.mapped.survival.parameters.Rd man/extract.quantities.mapped.transition.parameters.Rd man/extract.quantities.mark_recapture.Rd man/extract.quantities.recruitment_at_class.Rd man/extract.quantities.resight_p_at_class.Rd man/extract.quantities.scalar.parameter.values.Rd man/extract.quantities.selectivity_at_class.Rd man/extract.quantities.survival_at_class.Rd man/extract.quantities.total_survival_at_class.Rd man/extract.quantities.transition_at_class.Rd man/extract.quantities.vector.parameter.values.Rd man/extract.sbd.file.Rd man/get.sbd.command.Rd man/mr.optimiser.Rd man/populate.Rd man/sbd.commands.Rd man/set.command.with.autonumber.Rd man/set.command.with.label.Rd man/set.command.with.nolabel.Rd man/tmatrix-class.Rd man/write.sbd.file.Rd man/write_blocks.Rd
cttedwards/seabird2 documentation built on Feb. 5, 2018, 11:37 a.m.