Man pages for cttedwards/seabird2
Read and write SeaBird files in R
| add.command.with.argument | add.command.with.argument |
| add.command.with.autonumber | add.command.with.autonumber |
| add.command.with.label | add.command.with.label |
| add.command.with.nolabel | add.command.with.nolabel |
| extract.aic | extract.aic |
| extract.classes | extract.classes |
| extract.correlation.matrix | extract.correlation.matrix |
| extract.covariance.matrix | $Id: extract.covariance.matrix.R 1828 2007-11-30 01:16:07Z... |
| extract.fits | extract.fits |
| extract.free.parameters | extract.free.parameters |
| extract.header | extract.header |
| extract.initial.state | Get initial state from output file |
| extract.mcmc | extract.mcmc |
| extract.objective.function | extract.objective.function |
| extract.profiles | Extracts data from a casal -p run |
| extract.projection | Extract projection results to data frame |
| extract.quantities | extract.quantities |
| extract.quantities.1 | extract.quantities.1 |
| extract.quantities.2 | extract.quantities.2 |
| extract.quantities.3 | extract.quantities.3 |
| extract.quantities.4 | extract.quantities.4 |
| extract.quantities.5 | extract.quantities.5 |
| extract.quantities.6 | extract.quantities.6 |
| extract.quantities.actural_catches | extract.quantities.actural_catches |
| extract.quantities.base.parameter.values | extract.quantities.base.parameter.values |
| extract.quantities.derived.parameter.values | extract.quantities.derived.parameter.values |
| extract.quantities.fishing_pressures | extract.quantities.fishing_pressures |
| extract.quantities.from.table | $Id: extract.quantities.from.table.R 1828 2007-11-30... |
| extract.quantities.initialisation_at_class | extract.quantities.initialisation_at_class |
| extract.quantities.lambda | extract.quantities.lambda |
| extract.quantities.mapped.initialisation_parameters | extract.quantities.mapped.initialisation_parameters |
| extract.quantities.mapped.resight_p.parameters | extract.quantities.mapped.resight_p.parameters |
| extract.quantities.mapped.selectivity.parameters | extract.quantities.mapped.selectivity.parameters |
| extract.quantities.mapped.survival.parameters | extract.quantities.mapped.survival.parameters |
| extract.quantities.mapped.transition.parameters | extract.quantities.mapped.transition.parameters |
| extract.quantities.mark_recapture | extract.quantities.mark_recapture |
| extract.quantities.recruitment_at_class | extract.quantities.recruitment_at_class |
| extract.quantities.resight_p_at_class | extract.quantities.resight_p_at_class |
| extract.quantities.scalar.parameter.values | extract.quantities.scalar.parameter.values |
| extract.quantities.selectivity_at_class | extract.quantities.selectivity_at_class |
| extract.quantities.survival_at_class | extract.quantities.survival_at_class |
| extract.quantities.total_survival_at_class | extract.quantities.total_survival_at_class |
| extract.quantities.transition_at_class | extract.quantities.transition_at_class |
| extract.quantities.vector.parameter.values | extract.quantities.vector.parameter.values |
| extract.sbd.file | $Id: extract.csl.file.R 1830 2007-11-30 01:37:18Z adunn $ |
| get.sbd.command | $Id: get.sbd.command.R 1750 2007-11-13 00:45:01Z adunn $ |
| mr.optimiser | mr.optimiser |
| populate | Transition matrix constructor function |
| sbd.commands | $Id: sbd.commands.R 1750 2007-11-13 00:45:01Z adunn $ |
| SeaBird | Run SeaBird from within an R terminal session |
| SeaBird.convert.lines.to.matrix | SeaBird.convert.lines.to.matrix |
| SeaBird.convert.to.lines | $Id: SeaBird.convert.to.lines.R 1747 2007-11-12 21:01:38Z... |
| SeaBird.get.classes | Get vector of class names from 'population.sbd' |
| SeaBird.get.lines | $Id: SeaBird.get.lines.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.inR | $Id: SeaBird.inR.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.inS | $Id: SeaBird.inS.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.isin | $Id: SeaBird.isin.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.is.whole.number | $Id: SeaBird.is.whole.number.R 1747 2007-11-12 21:01:38Z... |
| SeaBird.make.filename | $Id: SeaBird.make.filename.R 1834 2007-12-02 21:32:26Z adunn... |
| SeaBird.make.list | $Id: SeaBird.make.list.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.make.sbd.commands | $Id: SeaBird.make.sbd.commands.R 1801 2007-11-22 21:15:33Z... |
| SeaBird.make.table | $Id: SeaBird.make.table.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.pos | $Id: SeaBird.pos.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.pos.match | $Id: SeaBird.pos.match.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.recodevector | $Id: SeaBird.recodevector.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.regexp.in | $Id: SeaBird.regexp.in.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.regexpr | Regular expression matching |
| SeaBird.remove.first.words | $Id: SeaBird.remove.first.words.R 1747 2007-11-12 21:01:38Z... |
| SeaBird.remove.last.words | $Id: SeaBird.remove.last.words.R 1747 2007-11-12 21:01:38Z... |
| SeaBird.string.to.vector.of.numbers | $Id: SeaBird.string.to.vector.of.numbers.R 1747 2007-11-12... |
| SeaBird.string.to.vector.of.words | $Id: SeaBird.string.to.vector.of.words.R 1747 2007-11-12... |
| SeaBird.trim.lines | Trim rows so that any unfinished iterations are removed |
| SeaBird.unpaste | $Id: SeaBird.unpaste.R 1747 2007-11-12 21:01:38Z adunn $ |
| SeaBird.write_mark_recapture | Write mark recapture data block |
| set.command.with.autonumber | set.command.with.autonumber |
| set.command.with.label | set.command.with.label |
| set.command.with.nolabel | set.command.with.nolabel |
| tmatrix-class | Transition matrix class |
| write_blocks | Write transition matrix to text file |
| write.sbd.file | $Id: write.sbd.file.R 1828 2007-11-30 01:16:07Z adunn $ |
