Man pages for cttedwards/seabird2
Read and write SeaBird files in R

add.command.with.argumentadd.command.with.argument
add.command.with.autonumberadd.command.with.autonumber
add.command.with.labeladd.command.with.label
add.command.with.nolabeladd.command.with.nolabel
extract.aicextract.aic
extract.classesextract.classes
extract.correlation.matrixextract.correlation.matrix
extract.covariance.matrix$Id: extract.covariance.matrix.R 1828 2007-11-30 01:16:07Z...
extract.fitsextract.fits
extract.free.parametersextract.free.parameters
extract.headerextract.header
extract.initial.stateGet initial state from output file
extract.mcmcextract.mcmc
extract.objective.functionextract.objective.function
extract.profilesExtracts data from a casal -p run
extract.projectionExtract projection results to data frame
extract.quantitiesextract.quantities
extract.quantities.1extract.quantities.1
extract.quantities.2extract.quantities.2
extract.quantities.3extract.quantities.3
extract.quantities.4extract.quantities.4
extract.quantities.5extract.quantities.5
extract.quantities.6extract.quantities.6
extract.quantities.actural_catchesextract.quantities.actural_catches
extract.quantities.base.parameter.valuesextract.quantities.base.parameter.values
extract.quantities.derived.parameter.valuesextract.quantities.derived.parameter.values
extract.quantities.fishing_pressuresextract.quantities.fishing_pressures
extract.quantities.from.table$Id: extract.quantities.from.table.R 1828 2007-11-30...
extract.quantities.initialisation_at_classextract.quantities.initialisation_at_class
extract.quantities.lambdaextract.quantities.lambda
extract.quantities.mapped.initialisation_parametersextract.quantities.mapped.initialisation_parameters
extract.quantities.mapped.resight_p.parametersextract.quantities.mapped.resight_p.parameters
extract.quantities.mapped.selectivity.parametersextract.quantities.mapped.selectivity.parameters
extract.quantities.mapped.survival.parametersextract.quantities.mapped.survival.parameters
extract.quantities.mapped.transition.parametersextract.quantities.mapped.transition.parameters
extract.quantities.mark_recaptureextract.quantities.mark_recapture
extract.quantities.recruitment_at_classextract.quantities.recruitment_at_class
extract.quantities.resight_p_at_classextract.quantities.resight_p_at_class
extract.quantities.scalar.parameter.valuesextract.quantities.scalar.parameter.values
extract.quantities.selectivity_at_classextract.quantities.selectivity_at_class
extract.quantities.survival_at_classextract.quantities.survival_at_class
extract.quantities.total_survival_at_classextract.quantities.total_survival_at_class
extract.quantities.transition_at_classextract.quantities.transition_at_class
extract.quantities.vector.parameter.valuesextract.quantities.vector.parameter.values
extract.sbd.file$Id: extract.csl.file.R 1830 2007-11-30 01:37:18Z adunn $
get.sbd.command$Id: get.sbd.command.R 1750 2007-11-13 00:45:01Z adunn $
mr.optimisermr.optimiser
populateTransition matrix constructor function
sbd.commands$Id: sbd.commands.R 1750 2007-11-13 00:45:01Z adunn $
SeaBirdRun SeaBird from within an R terminal session
SeaBird.convert.lines.to.matrixSeaBird.convert.lines.to.matrix
SeaBird.convert.to.lines$Id: SeaBird.convert.to.lines.R 1747 2007-11-12 21:01:38Z...
SeaBird.get.classesGet vector of class names from 'population.sbd'
SeaBird.get.lines$Id: SeaBird.get.lines.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.inR$Id: SeaBird.inR.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.inS$Id: SeaBird.inS.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.isin$Id: SeaBird.isin.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.is.whole.number$Id: SeaBird.is.whole.number.R 1747 2007-11-12 21:01:38Z...
SeaBird.make.filename$Id: SeaBird.make.filename.R 1834 2007-12-02 21:32:26Z adunn...
SeaBird.make.list$Id: SeaBird.make.list.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.make.sbd.commands$Id: SeaBird.make.sbd.commands.R 1801 2007-11-22 21:15:33Z...
SeaBird.make.table$Id: SeaBird.make.table.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.pos$Id: SeaBird.pos.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.pos.match$Id: SeaBird.pos.match.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.recodevector$Id: SeaBird.recodevector.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.regexp.in$Id: SeaBird.regexp.in.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.regexprRegular expression matching
SeaBird.remove.first.words$Id: SeaBird.remove.first.words.R 1747 2007-11-12 21:01:38Z...
SeaBird.remove.last.words$Id: SeaBird.remove.last.words.R 1747 2007-11-12 21:01:38Z...
SeaBird.string.to.vector.of.numbers$Id: SeaBird.string.to.vector.of.numbers.R 1747 2007-11-12...
SeaBird.string.to.vector.of.words$Id: SeaBird.string.to.vector.of.words.R 1747 2007-11-12...
SeaBird.trim.linesTrim rows so that any unfinished iterations are removed
SeaBird.unpaste$Id: SeaBird.unpaste.R 1747 2007-11-12 21:01:38Z adunn $
SeaBird.write_mark_recaptureWrite mark recapture data block
set.command.with.autonumberset.command.with.autonumber
set.command.with.labelset.command.with.label
set.command.with.nolabelset.command.with.nolabel
tmatrix-classTransition matrix class
write_blocksWrite transition matrix to text file
write.sbd.file$Id: write.sbd.file.R 1828 2007-11-30 01:16:07Z adunn $
cttedwards/seabird2 documentation built on Feb. 5, 2018, 11:37 a.m.